New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3848194	53 (0.900)	4 (0.070)	3/242	NT	7.3%	coding (1284/1329 nt)	PP_3396	hypothetical protein
	?	NC_002947	= 3848226	52 (0.930)					coding (1316/1329 nt)	PP_3396	hypothetical protein

GGCCAGCACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3848044‑3848194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagcACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTGACCTGCACCTTGGCCGGCGGAATGGGCGAGAGGGTCATGCTCAACGTCTTCACGGCGCCGGTACCGCCCAGGTTGCCGATCAGCGTGCCGTTGCCGGTATGTGCGGT  <  NC_002947/3848226‑3848081                                                                                                                                                                                                                                                                                                           GGCCAGCACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCAC                                                                                                                                                        >  6:203637/1‑147   CCAGCACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGC                                                                                                                                                    <  2:183816/149‑1                                         GCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGT                                                                                                              >  1:276914/1‑149                                          CACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTG                                                                                                             <  2:276914/149‑1                                                                   CGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTG                                                                                                             <  7:335467/124‑1                                                                   CGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTG                                                                                                             >  8:335467/1‑124                                                                                                                                                 CACCAGCACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTGACCTGCACCTTGGCCGGCGGAATGGGCGAGAGGGTCATGCTCAACGTCTTCACGGCGCCGGTACCGCCCAGGTTGCCGATCAGCGTGCCGTTGCCGGTATGTG      <  8:23327/149‑1                                                                                                                                                  ACCAGCACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTGACCTGCACCTTGGCCGGCGGAATGGGCGAGAGGGTCATGCTCAACGTCTTCACGGCGCCGGTACCGCCCAGGTTGCCGATCAGCGTGCCGTTGCCGGTATGTGC     >  8:279450/1‑149                                                                                                                                                      GCACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTGACCTGCACCTTGGCCGGCGGAATGGGCGAGAGGGTCATGCTCAACGTCTTCACGGCGCCGGTACCGCCCAGGTTGCCGATCAGCGTGCCGTTGCCGGTATGTGCGGT  >  4:304281/1‑148                                                                                                                                                      GCACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTGACCTGCACCTTGGCCGGCGGAATGGGCGAGAGGGTCATGCTCAACGTCTTCACGGCGCCGGTACCGCCCAGGTTGCCGATCAGCGTGCCGTTGCCGGTATGTGCGGT  >  5:297058/1‑148                                                                                                                                                       CACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTGACCTGCACCTTGGCCGGCGGAATGGGCGAGAGGGTCATGCTCAACGTCTTCACGGCGCCGGTACCGCCCAGGTTGCCGATCAGCGTGCCGTTGCCGGTATGTGCGGT  >  5:224947/1‑147                                                                                                                                                                                                                                                                                                           GGCCAGCACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3848044‑3848194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagcACCACGTCTTCGGAGTCGCTACCACCGTTGGCGCTGGTGACCTGCACCTTGGCCGGCGGAATGGGCGAGAGGGTCATGCTCAACGTCTTCACGGCGCCGGTACCGCCCAGGTTGCCGATCAGCGTGCCGTTGCCGGTATGTGCGGT  <  NC_002947/3848226‑3848081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.