New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3848194	53 (0.900)	4 (0.070)	3/242	NT	7.3%	coding (1284/1329 nt)	PP_3396	hypothetical protein
	?	NC_002947	= 3848226	52 (0.930)					coding (1316/1329 nt)	PP_3396	hypothetical protein

CCAGCACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTTCTCTCTTACCGTTACCAGCGCCGCGTTCG  >  NC_002947/3848046‑3848341                                                                                                                                                     |                                                                                                                                                     ccAGCACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGC                                                                                                                                                      <  2:183816‑M1/149‑1 (MQ=255)  cAGCACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAgcg                                                                                                                                                     >  4:48861/1‑149 (MQ=255)     cACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGcc                                                                                                                                                   >  6:297058/1‑148 (MQ=255)      aCCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCaa                                                                                                                                                 >  6:224947/1‑149 (MQ=255)         aGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACgg                                                                                                                                              <  5:203637/149‑1 (MQ=255)           tGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACggtg                                                                                                                                            <  6:190618/149‑1 (MQ=255)             aCGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACggtgg                                                                                                                                           >  7:73332/1‑148 (MQ=255)               gAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAg                                                                                                                                        <  3:247365/149‑1 (MQ=255)                 aacaacACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCg                                                                                                                                      <  3:4537/149‑1 (MQ=255)                  acaacaCCTCCAGTACTTCCCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGa                                                                                                                                     <  2:296488/149‑1 (MQ=255)                  acaacaCCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGa                                                                                                                                     >  1:172692/1‑149 (MQ=255)                  acaacaCCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTCGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCg                                                                                                                                      >  3:116907/1‑148 (MQ=255)                     acacCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTc                                                                                                                                  <  8:306993/149‑1 (MQ=255)                      cacCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTcc                                                                                                                                 <  3:48861/149‑1 (MQ=255)                            cAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGAc                                                                                                                           >  8:135517/1‑149 (MQ=255)                            cAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGAc                                                                                                                           <  4:116907/149‑1 (MQ=255)                                    aCCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTgc                                                                                                                    >  4:304281‑M2/1‑146 (MQ=255)                                    aCCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTgc                                                                                                                    >  5:297058‑M2/1‑146 (MQ=255)                                    aCCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTg                                                                                                                     >  5:224947‑M2/1‑146 (MQ=255)                                       gCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCaccacgtcttcggagtcgctaccaccgttggcgctggt                                                                                                                >  1:276914‑M1/1‑111 (MQ=255)                                       gCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTgctggt                                                                                                                >  8:279450‑M2/1‑143 (MQ=255)                                        cacaTACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCaccacgtcttcggagtcgctaccaccgttggcgctggtg                                                                                                               <  2:276914‑M1/149‑40 (MQ=255)                                        cacaTACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTgctggtg                                                                                                               <  8:23327‑M2/149‑8 (MQ=255)                                          caTACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGcc                                                                                                             <  6:50491/149‑1 (MQ=255)                                            tACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCAt                                                                                                           <  7:23327/149‑1 (MQ=255)                                             aCCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCAt                                                                                                           >  6:232636/1‑148 (MQ=255)                                              ccGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATg                                                                                                          <  7:135517/148‑1 (MQ=255)                                               cGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGCCCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGaa                                                                                                        >  5:194634/1‑149 (MQ=255)                                                   aaCGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGTGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGa                                                                                                    <  1:246891/149‑1 (MQ=255)                                                     cGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGAc                                                                                                   >  4:177427/1‑148 (MQ=255)                                                     cGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACa                                                                                                  <  6:186806/149‑1 (MQ=255)                                                        cACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAg                                                                                               >  2:376325/1‑149 (MQ=255)                                                              gATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTc                                                                                           >  2:300359/1‑147 (MQ=255)                                                              gATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTc                                                                                           <  1:300359/147‑1 (MQ=255)                                                               aTCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGc                                                                                        >  2:206396/1‑149 (MQ=255)                                                                 cGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCaccacgtcttcggagtcgctaccaccgttggcgctggtg                                                                                                               <  7:335467‑M1/124‑40 (MQ=255)                                                                 cGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCaccacgtcttcggagtcgctaccaccgttggcgctggtg                                                                                                               >  8:335467‑M1/1‑85 (MQ=255)                                                                  ggCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCtt                                                                                     >  2:44000/1‑149 (MQ=255)                                                                   gCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCtt                                                                                     >  5:237567/1‑148 (MQ=255)                                                                            gCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGgca                                                                           <  3:177427/149‑1 (MQ=255)                                                                             cGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAaggag                                                                              >  3:1663/1‑145 (MQ=255)                                                                             cGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAaggag                                                                              <  4:1663/145‑1 (MQ=255)                                                                             cGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGgcag                                                                          <  6:194634/149‑1 (MQ=255)                                                                                      cgcCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAacac                                                                 <  6:237567/149‑1 (MQ=255)                                                                                         cGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTg                                                              >  7:45063/1‑149 (MQ=255)                                                                                                  gTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTc                                                                                           <  8:181257/111‑1 (MQ=255)                                                                                                            aCCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGGGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGtt                                           <  2:302923/148‑1 (MQ=255)                                                                                                              ccTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGgc                                        >  5:351711/1‑149 (MQ=255)                                                                                                              ccTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGgc                                        >  1:346558/1‑149 (MQ=255)                                                                                                                    gCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGgccgcc                                    <  1:376325/147‑1 (MQ=255)                                                                                                                    gCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGccgccg                                   <  6:351711/148‑1 (MQ=255)                                                                                                                    gCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGccgccg                                   <  2:346558/148‑1 (MQ=255)                                                                                                                    gCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCgg                                  >  2:73014/1‑149 (MQ=255)                                                                                                                      ccATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGaa                                                                                                        >  7:135093/1‑78 (MQ=255)                                                                                                                      ccATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGaa                                                                                                        <  8:135093/78‑1 (MQ=255)                                                                                                                      ccATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGtt                                >  6:263482/1‑149 (MQ=255)                                                                                                                        aTTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTtc                              >  8:285520/1‑149 (MQ=255)                                                                                                                            cgccgGCCAAGGTGCAGGTCACCAGCGTCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCa                                                                                          <  1:109288/86‑1 (MQ=255)                                                                                                                            cgccgGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCa                                                                                          >  2:109288/1‑86 (MQ=255)                                                                                                                            cgccgGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTtctctc                          >  1:101372/1‑149 (MQ=255)                                                                                                                             gccgGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTTctctct                         >  7:188497/1‑149 (MQ=255)                                                                                                                               cgGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTTCTCTCTTa                       <  2:172692/149‑1 (MQ=255)                                                                                                                                     aGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGGCTCGCGCCGTGCGCTGTTGGCCGCCGGTTTCTCTCTTACCGtt                  <  1:73014/149‑1 (MQ=255)                                                                                                                                        tGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑t                                                           <  1:104665/104‑1 (MQ=255)                                                                                                                                        tGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑t                                                           >  2:104665/1‑104 (MQ=255)                                                                                                                                             gTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTTCTCTCTTACCGTTACCAGcgcc         >  6:272612/1‑149 (MQ=255)                                                                                                                                               cACCAGCaccacgtcttcggagtcgctaccaccgttggcgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccgatcagcgtgccgttgccggtatgtg        <  8:23327‑M1/149‑143 (MQ=255)                                                                                                                                               cACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccgatcagcgtgccgttgccggtatgtg        <  2:276914‑M2/149‑111 (MQ=255)                                                                                                                                               cACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccg                                 <  7:335467‑M2/124‑86 (MQ=255)                                                                                                                                               cACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccg                                 >  8:335467‑M2/1‑39 (MQ=255)                                                                                                                                                aCCAGCaccacgtcttcggagtcgctaccaccgttggcgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccgatcagcgtgccgttgccggtatgtgc       >  8:279450‑M1/1‑6 (MQ=255)                                                                                                                                                aCCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccgatcagcgtgccgttgccggtatgtgc       >  1:276914‑M2/1‑38 (MQ=255)                                                                                                                                                  cAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTTCTCTCTTACCGTTACCAGCGCCGCGtt    >  5:61116/1‑149 (MQ=255)                                                                                                                                                  cAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTTCTCTCTTACCGTTACCAGCGCCGCGtt    >  2:312792/1‑149 (MQ=255)                                                                                                                                                    gcgcCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTTCTCTCTTACCGTTACCAGCGCCGCGTTcg  <  7:285520/149‑1 (MQ=255)                                                                                                                                                    gCaccacgtcttcggagtcgctaccaccgttggcgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccgatcagcgtgccgttgccggtatgtgcggt    >  5:297058‑M1/1‑2 (MQ=255)                                                                                                                                                    gCaccacgtcttcggagtcgctaccaccgttggcgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccgatcagcgtgccgttgccggtatgtgcggt    >  4:304281‑M1/1‑2 (MQ=255)                                                                                                                                                     caccacgtcttcggagtcgctaccaccgttggcgctggtgacctgcaccttggccggcggaatgggcgagagggtcatgctcaacgtcttcacggcgccggtaccgcccaggttgccgatcagcgtgccgttgccggtatgtgcggt    >  5:224947‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCAGCACCAGTGACGAAACAACACCTCCAGTACTTACCGCACATACCGGCAACGGCACGCTGATCGGCAACCTGGGCGGTACCGGCGCCGTGAAGACGTTGAGCATGACCCTCTCGCCCATTCCGCCGGCCAAGGTGCAGGTCACCAGCGCCAACGGTGGTAGCGACTCCGAAGACGTGGTGCTGGTGCCATGAACAGACAAAGGCTCAGCCTTCAAGGAGGCAGCATGAACACTTGG‑TCGCGCCGTGCGCTGTTGGCCGCCGGTTTCTCTCTTACCGTTACCAGCGCCGCGTTCG  >  NC_002947/3848046‑3848341

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.