| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3881230 = | 61 (1.030) | 4 (0.070) | 4/250 | NT | 6.6% | coding (3065/3180 nt) | mexF | multidrug RND transporter MexF |
| ? | NC_002947 | 3881324 = | 54 (0.940) | coding (3159/3180 nt) | mexF | multidrug RND transporter MexF | |||||
GCCAGCAGGCTTGGGGTCAAGGGTTTGAGCAGGTTCATGCGTGGTTCTCCAGCACTTGAGCGTGTTCAGCCTTGCGGGCCTGGCGACGCTCGACGAAACGGCGGATCAGGAAGAAGAACACCGGGGTGAGGAACAGGCCGAACACGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3881379‑3881230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCGCCAGCCACCGAACCTGCGCAATTGAGCAGCGATGTGCAGGCCAAGGCCT > NC_002947/3881324‑3881471 tgcggtAGGCTTGGGGTCAAGGGTTTGAGCAGGTTCATGCGTGGTTCTCCAGCACTTGAGCGTGTTCAGCCTTGCGGGCCTGGCGACGCTCGACGAAACGGCGGATCAGGAAGAAGAACACCGGGGTGAGGAACAGGCCGAACACGGTC < 6:312131/143‑1 AGCACTTGAGCGTGTTCAGCCTTGCGGGCCTGGCGACGCTCGACGAAACGGCGGATCAGGAAGAAGAACACCGGGGTGAGGAACAGGCCGAACACGGTCAAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCC > 3:237093/1‑149 CTTGAGCGTGTTCAGCCTTGCGGGCCTGGCGACGCTCGACGAAACGGCGGATCAGGAAGAAGAACACCGGGGTGAGGAACAGGCCGAACACGGTCAAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCT > 7:134561/1‑149 GCGACGCTCGACGAAACGGCGGATCAGGAAGAAGAACACCGGGGTGAGGAACAGGCCGAACACGGTCAAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTA < 4:237093/149‑1 GACGAAACGGCGGATCAGGAAGAAGAACACCGGGGTGAGGAACAGGCCGAACACGGTCAAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGA < 8:134561/148‑1 TCAAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCGCCAGCCACCGAACCTGCGCAATTGAGCAGCGATGTGCAGGCCAAGGC > 3:291208/1‑149 AAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCGCCAGCCACCGAACCTGCGCAATTGAGCAGCGATGTGCAGGCCAAGGCCT < 5:186136/149‑1 AAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCGCCAGCCACCGAACCTGCGCAATTGAGCAGCGATGTGCAGGCCAAGGCCT < 5:191546/149‑1 AAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCGCCAGCCACCGAACCTGCGCAATTGAGCAGCGATGTGCAGGCCAAGGCCT < 6:390894/149‑1 GCCAGCAGGCTTGGGGTCAAGGGTTTGAGCAGGTTCATGCGTGGTTCTCCAGCACTTGAGCGTGTTCAGCCTTGCGGGCCTGGCGACGCTCGACGAAACGGCGGATCAGGAAGAAGAACACCGGGGTGAGGAACAGGCCGAACACGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3881379‑3881230‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaAGTGCTGGAGAACCACGCATGAACCTGCTCAAACCCTTGACCCCAAGCCTGCTGGCACTGGCCCTGGCGGCCTGTGCGGTAGGCCCGGACTACCAGGCGCCAGCCACCGAACCTGCGCAATTGAGCAGCGATGTGCAGGCCAAGGCCT > NC_002947/3881324‑3881471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |