New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3888127	50 (0.850)	3 (0.050)	3/242	NT	5.9%	coding (132/687 nt)	PP_3431	ThiJ/PfpI family protein
	?	NC_002947	= 3888157	49 (0.880)					coding (162/687 nt)	PP_3431	ThiJ/PfpI family protein

GTTGCCGACGGGAGCAGGGTCATGAGCAAGAAAATTCTGGTGGTGTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3887975‑3888127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgacGGGAACGTAACCGCCCTGTGGGCTGACATAGTCGACCGTGTAGCCGGCCTTTTCGACTTTCTCGACAAAGTGAACGGCTTCACCCAGCCACAACCCGGTCGCCCGTTTGAGGGTTGGATACTTCGCTGTATTGGTCAACACCA  <  NC_002947/3888157‑3888015                                                                                                                                                                                                                                                                                                          GTTGCCGACGGGAGCAGGGTCATGAGCAAGAAAATTCTGGTGGTGTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGT                                                                                                                                                     >  4:322163/1‑149     CCGACGGGAGCAGGGTCATGAGCAAGAAAATTCTGGTGGTGTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGA                                                                                                                                                  <  7:263997/148‑1                                      TGGTGGTGTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACGGGAACGTAACCGCCCTGTGGGCTGACATAGTC                                                                                                                >  1:359939/1‑149                                              TTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACGGGAACGTAACCTCCCTGTGGGCTGACATAGTCGACCGTG                                                                                                         <  8:7279/148‑1                                              TTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACGGGAACGTAACCGCCCTGTGGGCTGACATAGTCGACCGTGT                                                                                                        <  2:359939/149‑1                                                 ACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACG                                                                                                                                                       >  7:209086/1‑99                                                 ACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACG                                                                                                                                                       <  8:209086/99‑1                                                                            AAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACG                                                                                                                                                       >  1:37459/1‑72                                                                            AAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACG                                                                                                                                                       <  2:37459/72‑1                                                                                                                                                   GGTCGACGGGAACGTAACCGCCCTGTGGGCTGACATAGTCGACCGTGTAGCCGGCCTTTTCGACTTTCTCGACAAAGTGAACGGCTTCACCCAGCCACAACCCGGTCGCCCGTTTGAGGGTTGGATACTTCGCTGTATTGGTCAACACC   <  3:205262/149‑1                                                                                                                                                    GTCGACGGGAACGTAACCGCCCTGTGGGCTGACATAGTCGACCGGGTAGCCGGCCTTTTCGACTTTCTCGACAAAGTGAACGGCTTCACCCAGCCACAACCCGGTCGCCCGTTTGAGGGTTGGATACTTCGCTGTATTGGTCAACACCA  <  2:79015/149‑1                                                                                                                                                                                                                                                                                                          GTTGCCGACGGGAGCAGGGTCATGAGCAAGAAAATTCTGGTGGTGTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3887975‑3888127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgacGGGAACGTAACCGCCCTGTGGGCTGACATAGTCGACCGTGTAGCCGGCCTTTTCGACTTTCTCGACAAAGTGAACGGCTTCACCCAGCCACAACCCGGTCGCCCGTTTGAGGGTTGGATACTTCGCTGTATTGGTCAACACCA  <  NC_002947/3888157‑3888015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.