New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3888127	50 (0.850)	3 (0.050)	3/242	NT	5.9%	coding (132/687 nt)	PP_3431	ThiJ/PfpI family protein
	?	NC_002947	= 3888157	49 (0.880)					coding (162/687 nt)	PP_3431	ThiJ/PfpI family protein

TGGTGTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTATTACACCGGTGGG  >  NC_002947/3888015‑3888301                                                                                                                                               |                                                                                                                                                  tggtgTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACCCGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCgtcgac                                                                                                                                             <  2:79015‑M2/149‑7 (MQ=255)  ggtgTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCgtcgacc                                                                                                                                            <  3:205262‑M2/149‑8 (MQ=255)     gtTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCg                                                                                                                                          >  5:172977/1‑148 (MQ=255)                           ccAAGCCTGAATCGGGCGACCGTGTTGTGGCTGGGTGAAGACGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGTGTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACGCGCACAGCCTGCAGATGGCCCCgg                                                                                                                    <  1:254984/148‑1 (MQ=255)                            cAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGAc                                                                                                                  >  6:270853/1‑149 (MQ=255)                             aaCCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGAcc                                                                                                                 >  6:173153/1‑149 (MQ=255)                               cccTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTg                                                                                                               <  5:38394/149‑1 (MQ=255)                                ccTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGAC‑ATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGa                                                                                                             <  8:234123/149‑1 (MQ=255)                                   cAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACt                                                                                                           >  6:53400/1‑149 (MQ=255)                                    aaaCGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTg                                                                                                          >  2:79063/1‑149 (MQ=255)                                       cGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGAc                                                                                                                  <  5:83581/138‑1 (MQ=255)                                       cGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGAc                                                                                                                  >  6:83581/1‑138 (MQ=255)                                         ggCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGt                                                                                                     <  6:172977/149‑1 (MQ=255)                                          gCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTg                                                                                                    <  3:322163/149‑1 (MQ=255)                                                 ggTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGGCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTacgac                                                                                             <  4:273954/149‑1 (MQ=255)                                                        gCTGGGTGAAGCCGTTCACTTTGTCGATAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCTCACAGCCTGCAGATGGCACCGGACCTGGACTGGCAGTGGTACGACGACAAgc                                                                                      <  8:129476/149‑1 (MQ=255)                                                           gggTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCt                                                                                   >  6:171886/1‑149 (MQ=255)                                                            ggTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGc                                                                                                                                <  7:154672/103‑1 (MQ=255)                                                            ggTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGc                                                                                                                                >  8:154672/1‑103 (MQ=255)                                                             gTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTc                                                                                 <  5:53400/149‑1 (MQ=255)                                                                aaGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAt                                                                               >  4:254723/1‑148 (MQ=255)                                                                aaGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑g                                                                             <  1:79063/149‑1 (MQ=255)                                                                  gCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GAc                                                                           >  1:109947/1‑149 (MQ=255)                                                                   ccGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTacgac                                                                                             <  3:225463/131‑1 (MQ=255)                                                                   ccGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTacgac                                                                                             >  4:225463/1‑131 (MQ=255)                                                                     gTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAACCTGCAGATGGCCCCGGACCTCGACTGGCACTGGTACGACGACAAGCGCTTCAT‑GAcgcg                                                                        >  5:171627/1‑149 (MQ=255)                                                                            ttGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGGCTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTgg                                                                  >  8:285511/1‑148 (MQ=255)                                                                                  agaAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGa                                                                                                                             >  3:181007/1‑84 (MQ=255)                                                                                  agaAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGa                                                                                                                             <  4:181007/84‑1 (MQ=255)                                                                                       gTCGAAAAGGCCGGCTACACGTTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGc                                                      <  4:41007/149‑1 (MQ=255)                                                                                        tCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGcc                                                     <  3:254723/149‑1 (MQ=255)                                                                                            aaaGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAg                                                 <  4:205262/149‑1 (MQ=255)                                                                                                  cGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGCCCTGGCCTGGCAGTGGTCCGCCGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAgg                                           >  7:138169/1‑149 (MQ=255)                                                                                                     cTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTg                                         >  1:77039/1‑148 (MQ=255)                                                                                                     cTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGAGCTACGACGACAAGCCCTTCAT‑GACGCGTCTTGGCAGTACCATGGCCCCCGGGCAGGTg                                         >  8:253960/1‑148 (MQ=255)                                                                                                       acacGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCgtcgaccgtgtagccggccttttcgactttctcgacaaagtgaacggcttcacccagccacaacccggtcgcccgtttgagggttggatacttcgctgtattggtcaa                                       <  2:359939‑M2/149‑109 (MQ=255)                                                                                                        cacGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGaa                                       <  2:77039/147‑1 (MQ=255)                                                                                                        cacGGTCGACTATGTCAGCCCACAGGGAGGTTACGTTCCCgtcgaccgtgtagccggccttttcgactttctcgacaaagtgaacggcttcacccagccacaacccggtcgcccgtttgagggttggatacttcgctgtattggtcaa                                       <  8:7279‑M2/148‑109 (MQ=255)                                                                                                         acGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGc                                    >  5:39337/1‑149 (MQ=255)                                                                                                             tCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGAc                                <  5:270853/149‑1 (MQ=255)                                                                                                             gcGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGGCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCATCGACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGa                                 <  1:79015/148‑1 (MQ=255)                                                                                                               gACTATGTCAGCCCACAGGGCGGTTACGTTCCCgtcgaccgtgtagccggccttttcgactttctcgacaaagtgaacggcttcacccagccacaacccggtcgcccgtttgagggttggatacttcgctgtattggtcaacaccacca                               >  1:359939‑M2/1‑33 (MQ=255)                                                                                                                           ccACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCa                   >  2:123823/1‑148 (MQ=255)                                                                                                                           ccACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCAt                  <  1:123823/149‑1 (MQ=255)                                                                                                                            cacaGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCAt                  >  6:321948/1‑148 (MQ=255)                                                                                                                            cacaGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCAt                  <  5:321948/148‑1 (MQ=255)                                                                                                                              caGAGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTa               <  5:171886/149‑1 (MQ=255)                                                                                                                               aGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTAt              >  8:82205/1‑149 (MQ=255)                                                                                                                               aGGGCGGTTACGTTCCCGTCGACCCACACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTacga                                                                                              <  8:179985/70‑1 (MQ=255)                                                                                                                               aGGGCGGTTACGTTCCCGTCGACCCACACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTacga                                                                                              >  7:179985/1‑70 (MQ=255)                                                                                                                                     gTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTATTACAcc        >  5:267690/1‑149 (MQ=255)                                                                                                                                         cGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGGCTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTATTACACCGGTg    <  7:285511/149‑1 (MQ=255)                                                                                                                                         cGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTATTACACCGGt     <  7:82205/148‑1 (MQ=255)                                                                                                                                          gTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTATTACACCGGTgg   <  3:257195/149‑1 (MQ=255)                                                                                                                                          gTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTATTACACCGGTgg   >  1:328991/1‑149 (MQ=255)                                                                                                                                           ttCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTATTACACCGGTggg  >  8:69751/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                  TGGTGTTGACCAATACAGCGAAGTATCCAACCCTCAAACGGGCGACCGGGTTGTGGCTGGGTGAAGCCGTTCACTTTGTCGAGAAAGTCGAAAAGGCCGGCTACACGGTCGACTATGTCAGCCCACAGGGCGGTTACGTTCCCGTCGACCCGCACAGCCTGCAGATGGCCCCGGACCTGGACTGGCAGTGGTACGACGACAAGCGCTTCAT‑GACGCGTCTTGGCAGTACCTTGGCCCCAGGGCAGGTGAAGGCTGACGAATACAGCGTCATCTATTACACCGGTGGG  >  NC_002947/3888015‑3888301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.