| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4062012 = | 56 (0.950) | 3 (0.050) | 3/242 | NT | 5.5% | coding (64/306 nt) | PP_3580 | hypothetical protein |
| ? | NC_002947 | 4062056 = | 51 (0.910) | coding (108/306 nt) | PP_3580 | hypothetical protein | |||||
TCGCTGCACAGGGGATACCCGCAATCGCCAGCAGGGTTTCACCGCTGGCGCGGTCGAACAGCCGCGCGACCATGCTGCGTGGCGCATCCATGCTGGCCTCGAAGCCCAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4062159‑4062012‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgggCTTCGAGGCCAGCATGGATGCGCCACGCAGCATGGTCGCGCGGCTGTTCGACCGCGCCAGCGGTGAAACCCTGCTGGCGATTGCGGGTATCCCCTGTGCAGCGATCATGGCCGCCGCCGATGTAGAGCGCATCATCGAGGCCG > NC_002947/4062056‑4062198 TCGCTGCACAGGGGATACCCGCAATCGCCAGCAGGGTTTCACCGCTGGCGCGGTCGAACAGCCGCGCGACCATGCTGCGTGGCGCATCCATGCTGGCCTCGAAGCCCAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGGG > 2:220685/1‑148 CTGCACAGGGGATACCCGCAATCGCCAGCAGGGTTTCACCGCTGGCGCGGTCGAACAGCCGCGCGACCATGCTGCGTGGCGCATCCATGCTGGCCTCGAAGCCCAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGG > 3:562/1‑144 CTGCACAGGGGATACCCGCAATCGCCAGCAGGGTTTCACCGCTGGCGCGGTCGAACAGCCGCGCGACCATGCTGCGTGGCGCATCCATGCTGGCCTCGAAGCCCAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGG < 4:562/144‑1 CCGCAATCGCCAGCAGGGTTTCACCGCTGGCGCGGTCGAACAGCCGCGCGACCATGCTGCGTGGCGCATCCATGCTGGCCTCGAAGCCCAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGG < 7:7304/129‑1 CCGCAATCGCCAGCAGGGTTTCACCGCTGGCGCGGTCGAACAGCCGCGCGACCATGCTGCGTGGCGCATCCATGCTGGCCTCGAAGCCCAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGG > 8:7304/1‑129 AGCCCAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGGGCTTCGAGGCCAGCATGGATGCGCCACGCAGCATGGTCGCGCGGCTGTTCGACCGCGCCAGCGGTGAAACCCTGCTGGCGATTGCGGGTATCCCCTGTGCAGC > 2:279018/1‑148 CAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGGGCTTCGAGGCCAGCATGGATGCGCCACGCAGCATGGTCGCGCGGCTGTTCGACCGCGCCAGCGGTGAAACCCTGCTGGCGATTGCGGGTATCCCCTGTGCAGCGATCA > 3:214509/1‑149 AACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGGGCTTCGAGGCCAGCATGGATGCGCCACGCAGCATGGTCGCGCGGCTGTTCGACCGCGCCAGCGGTGAAACCCTGCTGGCGATTGCGGGTATCCCCTGTGCAGCGATCAT < 4:214509/149‑1 GTTGGGCTTCGAGGCCAGCATGGATGCGCCACGCAGCATGGTCGCGCGGCTGTTCGACCGCGCCAGCGGTGAAACCCTGCTGGCGATTGCGGGTATCCCCTGTGCAGCGATCATGGCCGCCGCCGATGTAGAGCGCATCATCGAGGCCG > 4:295046/1‑149 GGGCTTCGAGGCCAGCATGGATGCGCCACGCAGCATGGTCGCGCGGCTGTTCGACCGCGCCAGCGGTGAAACCCTGCTGGCGATTGCGGGTATCCCCTGTGCAGCGAT < 6:120342/108‑1 TCGCTGCACAGGGGATACCCGCAATCGCCAGCAGGGTTTCACCGCTGGCGCGGTCGAACAGCCGCGCGACCATGCTGCGTGGCGCATCCATGCTGGCCTCGAAGCCCAACGGATGGAAATGCCAGCGCATCACCTGGCAGGCGTTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4062159‑4062012‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgttgggCTTCGAGGCCAGCATGGATGCGCCACGCAGCATGGTCGCGCGGCTGTTCGACCGCGCCAGCGGTGAAACCCTGCTGGCGATTGCGGGTATCCCCTGTGCAGCGATCATGGCCGCCGCCGATGTAGAGCGCATCATCGAGGCCG > NC_002947/4062056‑4062198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |