New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4277499	52 (0.880)	3 (0.050)	3/244	NT	5.5%	coding (895/1236 nt)	glcF	glycolate oxidase iron‑sulfur subunit
	?	NC_002947	= 4277554	54 (0.960)					coding (950/1236 nt)	glcF	glycolate oxidase iron‑sulfur subunit

GCGGCTGCGGTGCGTTTGTCCGCGACTATGGCCACCTGCTGGAAAAAGACCCCCATTACGCTGCCAAGGCCGCCCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4277350‑4277499 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgCCCAGCTTCAGTGCGTGCTGCAGGGTGCATGGACAGTGGAAGGCCAGGCGCTGTTCGGCGCACAGGGCCAATTGTTCGATCGGC  <  NC_002947/4277554‑4277471                                                                                                                                                                                                                                            GCGGCTGCGGTGCGTTTGTCCGCGACTATGGCCACCTGCTGGAAAAAGACCCCCATTACGCTGCCAAGGCCGCCCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCC                                                                                       >  2:279257/1‑149  CGGCTGCGGTGCGTTTGTCCGCGACTATGGCCACCTGCTGGAAAAAGACCCCCATTACGCTGCCAAGGCCGCCCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCG                                                                                      <  4:137249/149‑1                                                                CCAAGGCCGCCCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGCCCAGCTTCAGTGCGTGCTGCAGGGTGCATGGACAGTGGAAGGCCAGGCGCTGTTCGGCG                          <  5:46708/147‑1                                                                                                        GGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGCCCAGCTTCAGTGCGTGCTGCAGGGTGCATGGACAGTGGAAGGCCAGGCGCTGTTCGGCGCACAGGGCCAATTGTTCGATCGGC  >  3:361467/1‑131                                                                                                        GGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGCCCAGCTTCAGTGCGTGCTGCAGGGTGCATGGACAGTGGAAGGCCAGGCGCTGTTCGGCGCACAGGGCCAATTGTTCGATCGGC  <  4:361467/131‑1                                                                                                                                                                                                                                            GCGGCTGCGGTGCGTTTGTCCGCGACTATGGCCACCTGCTGGAAAAAGACCCCCATTACGCTGCCAAGGCCGCCCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4277350‑4277499 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgCCCAGCTTCAGTGCGTGCTGCAGGGTGCATGGACAGTGGAAGGCCAGGCGCTGTTCGGCGCACAGGGCCAATTGTTCGATCGGC  <  NC_002947/4277554‑4277471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.