New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4277499 | 52 (0.880) | 3 (0.050) | 3/244 | NT | 5.5% | coding (895/1236 nt) | glcF | glycolate oxidase iron‑sulfur subunit |
? | NC_002947 | = 4277554 | 54 (0.960) | coding (950/1236 nt) | glcF | glycolate oxidase iron‑sulfur subunit |
CCAAGGCCGCCCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCGTCTGAATGCGCTG > NC_002947/4277413‑4277702 | ccAAGGCCGCCCGGGTCAGCGCTCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGcgcg < 1:237435/149‑1 (MQ=255) ggCCGCCCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCgg > 3:188807/1‑146 (MQ=255) gccgccCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTa > 7:298130/1‑147 (MQ=255) cccGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCg > 4:272090/1‑149 (MQ=255) ccGGGGCAGCGCCCTTTCCCGCGATCTGCTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGTGCCTGTTCTCCGAACAGCGCCTGGCCTTCCAGTGTCCATGCACCCTGCAGCTCTCACTGAAGCTGGGCGGCGCGGTAGAGGCGt < 8:75565/149‑1 (MQ=255) aGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGa < 5:271986/148‑1 (MQ=255) ccGCCATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAAAAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGTCACggctaggct > 1:184986/1‑149 (MQ=255) gtggAAATCCTGCGCGATGAGCCTATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCt < 3:115345/146‑1 (MQ=255) gtggAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGa < 1:279257/148‑1 (MQ=255) tggAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTa < 1:69185/141‑1 (MQ=255) tggAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTa > 2:69185/1‑141 (MQ=255) aaaTCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCg > 8:304959/1‑149 (MQ=255) aaTCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCgg < 3:272090/149‑1 (MQ=255) ccTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGc > 7:257575/1‑149 (MQ=255) cTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCGACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGcc > 8:28948/1‑149 (MQ=255) gAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCt < 8:292617/107‑1 (MQ=255) gAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCt > 7:292617/1‑107 (MQ=255) gAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCg > 3:343112/1‑142 (MQ=255) gAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCg < 4:343112/142‑1 (MQ=255) gCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGcggcgcacagggccaattgttcgatcggctcatcgcgcaggatttcc > 3:361467‑M2/1‑84 (MQ=255) gCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGcggcgcacagggccaattgttcgatcggctcatcgcgcaggatttcc < 4:361467‑M2/131‑48 (MQ=255) aTCGAACAATTGGCCCTGTGCGACGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCTCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCtgtg > 6:235787/1‑149 (MQ=255) aaCAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGtgctgc > 2:333986/1‑149 (MQ=255) aCAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCg < 1:47491/149‑1 (MQ=255) gCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCgg > 5:167730/1‑148 (MQ=255) ccTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCgg < 7:99853/146‑1 (MQ=255) ccTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCgg > 8:99853/1‑146 (MQ=255) gtgCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGccc > 4:87850/1‑118 (MQ=255) gtgCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGccc < 3:87850/118‑1 (MQ=255) gcgcCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACggc < 4:194908/90‑1 (MQ=255) gcgcCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACggc > 3:194908/1‑90 (MQ=255) cgcCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGcggcgcacagggccaattgttcgatcggctcatcgcgcaggatttccaccagatcgcgggaaagggcgctgacccgggcggccttgg < 5:46708‑M2/147‑88 (MQ=255) gcCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGAc > 8:75486/1‑104 (MQ=255) gcCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGAc < 7:75486/104‑1 (MQ=255) gcCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCgg < 1:48876/139‑1 (MQ=255) gcCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCgg > 2:48876/1‑139 (MQ=255) cGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTAtt > 5:234326/1‑149 (MQ=255) cAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCt > 7:23319/1‑149 (MQ=255) gcgcCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGa < 4:188807/149‑1 (MQ=255) cTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACccagc > 8:328871/1‑146 (MQ=255) aCTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCggcaggc < 6:171651/122‑1 (MQ=255) aCTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCggcaggc > 5:171651/1‑122 (MQ=255) aCTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTg > 7:187155/1‑149 (MQ=255) cTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGt < 8:257575/149‑1 (MQ=255) tCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCa < 5:235787/148‑1 (MQ=255) cATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTg > 3:187964/1‑149 (MQ=255) cATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACACTGACCTCGGTGCCAGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCTCTGCCCCAGCCAGAACTGGCACTg > 8:182239/1‑149 (MQ=255) tGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGc > 8:75675/1‑148 (MQ=255) cACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCaa < 7:328871/148‑1 (MQ=255) aCCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGccc > 7:213983/1‑81 (MQ=255) aCCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGccc < 8:213983/81‑1 (MQ=255) ccTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTAc > 4:79171/1‑149 (MQ=255) ccTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTAc > 2:128996/1‑149 (MQ=255) acgcacTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGc > 3:203748/1‑135 (MQ=255) acgcacTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGc < 4:203748/135‑1 (MQ=255) gcacTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCggcaggc > 6:343996/1‑99 (MQ=255) gcacTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCggcaggc < 5:343996/99‑1 (MQ=255) gcacTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCg > 3:270301/1‑149 (MQ=255) cTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCGTCt < 1:128996/149‑1 (MQ=255) cTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCGTCt < 8:298130/149‑1 (MQ=255) gggCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCGTCTGAATgcgc > 5:27703/1‑149 (MQ=255) ggcggcGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCggcaggca > 6:150903/1‑88 (MQ=255) ggcggcGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCGTCTGAATGCGCt > 1:49475/1‑149 (MQ=255) gcggcgCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCGTCTGAATGCGCTg > 3:342319/1‑149 (MQ=255) gcggcgCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCGTCTGAATGCGCTg < 6:167730/149‑1 (MQ=255) | CCAAGGCCGCCCGGGTCAGCGCCCTTTCCCGCGATCTGGTGGAAATCCTGCGCGATGAGCCGATCGAACAATTGGCCCTGTGCGCCGAACAGCGCCTGGCCTTCCACTGTCCATGCACCCTGCAGCACGCACTGAAGCTGGGCGGCGCGGTAGAGGCGTTGCTGACACGGCTTGGCTTTACCCTGACCTCGGTGCCCGATGGCCACCTGTGCTGCGGCTCGGCAGGCACCTATTCGCTGACCCAGCCAGAACTGTCACTGCAACTACGCGACAATCGTCTGAATGCGCTG > NC_002947/4277413‑4277702 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |