New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4281980 =	53 (0.900)	3 (0.050)	3/244	NT	5.7%	intergenic (‑557/+161)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
	?	NC_002947	4282011 =	48 (0.850)					intergenic (‑588/+130)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator

CTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAATAGGCCAGCACAGGCCACCCGAAAGGATCAGGCCGGCACCATGGCAAAGCCGACGCCGAACCGGTTCCAGGCATTGATGGTGGCAATTGCCAAGGTCAGGTTGGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4282132‑4281980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGC  >  NC_002947/4282011‑4282158                                                                                                                                                                                                                                                                                                               CTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAATAGGCCAGCACAGGCCACCCGAAAGGATCAGGCCGGCACCATGGCAAAGCCGACGCCGAACCGGTTCCAGGCATTGATGGTGGCAATTGCCAAGGTCAGGTTGG                                                                                                                                                           <  8:196978/148‑1     AGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAATAGGCCAGCACAGGCCACCCGAAAGGATCAGGCCGGCACCATGGCAAAGCCGACGCCGAACCGGTTCCAGGCATTGATGGTGGCAATTGCCAAGGTCAGGTTGGCCACC                                                                                                                                                      <  5:105654/149‑1                        AGGAGCGGGCTTGCCCGCGAATAGGCCAGCACAGGCCACCCGAAAGGATCAGGCCGGCACCATGGCAAAGCCGACGCCGAACCGGTTCCAGGCATTGATGGTGGCAATTGCCAAGGTCAGGTTGGC                                                                                                                                                          <  3:71467/126‑1                        AGGAGCGGGCTTGCCCGCGAATAGGCCAGCACAGGCCACCCGAAAGGATCAGGCCGGCAACATGGCAAAGCCGACGCCGAACCGGTTCCAGGCATTGATGGTGGCAATTGCCAAGGTCAGGTTGGC                                                                                                                                                          >  4:71467/1‑126                                                                                                                     ATTGATGGTGGCAATTGCCAAGGTCAGGTTGGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCG                                      >  2:29632/1‑149                                                                                                                         ATGGTGGCAATTGCCAAGGTCAGGTTGGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGAT                                                                                                  <  7:325358/85‑1                                                                                                                         ATGGTGGCAATTGCCAAGGTCAGGTTGGCCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGAT                                                                                                  >  8:325358/1‑85                                                                                                                                                     CCACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGGGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTCGCCTATTCGCGGGCCAGCCCGCTCCTACAATTCTGGGCGGGCCCTGTAGGAGCGGGTTTACCCGCGAACAC      <  7:196978/149‑1                                                                                                                                                      CACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACC     <  8:21670/149‑1                                                                                                                                                      CACCATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGCATGCCCGCGAAgaa      >  1:156395/1‑145                                                                                                                                                         CATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCGTATTCGCGG                                                                 <  6:337018/86‑1                                                                                                                                                         CATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGC  <  8:343864/149‑1                                                                                                                                                         CATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGG                                                                 >  5:337018/1‑86                                                                                                                                                                                                                                                                                                               CTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAATAGGCCAGCACAGGCCACCCGAAAGGATCAGGCCGGCACCATGGCAAAGCCGACGCCGAACCGGTTCCAGGCATTGATGGTGGCAATTGCCAAGGTCAGGTTGGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4282132‑4281980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccATCAATGCCTGGAACCGGTTCGGCGTCGGCTTTGCCATGGTGCCGGCCTGATCCTTTCGGGTGGCCTGTGCTGGCCTATTCGCGGGCAAGCCCGCTCCTACAATTCTGGGCGTGCCCTGTAGGAGCGGGTTTACCCGCGAACACCGGC  >  NC_002947/4282011‑4282158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.