New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 443395979 (1.340)4 (0.070) 4/238 NT 5.0% intergenic (+107/‑56) PP_3928/PP_3929 hypothetical protein/hypothetical protein
?NC_002947 = 4433985 77 (1.400)intergenic (+133/‑30) PP_3928/PP_3929 hypothetical protein/hypothetical protein

GTGCAGATCACCAATGGCGTGGTGCTGGCGATTCAACCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4433805‑4433959
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgccaAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTGGTT  <  NC_002947/4433985‑4433839
                                                                                                                                                                                                                                                                                                              
GTGCAGATCACCAATGGCGTGGTGCTGGCGATTCAACCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGT                                                                                                                                                             >  6:347099/1‑147
                                      AGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGC                                                                                                                     <  5:378152/149‑1
                                            CTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCG                                                                                                               <  7:198668/149‑1
                                                        GCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGAC                                                                                                                 <  7:316394/135‑1
                                                        GCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGAC                                                                                                                 >  8:316394/1‑135
                                                                                                                                                     GCGCCTAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGTCCATGCTTGTCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGTCGTGTC                   <  8:266261/136‑1
                                                                                                                                                     GCGCCAAGGCGTCCGTATGAAAGAACGGGCTGTCGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCCGCGGCGAAGTGCTGTGCAATCGGTCGACTTGGCCGGGGCGTGTC                   >  7:266261/1‑136
                                                                                                                                                      CGCCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTG     <  2:233496/149‑1
                                                                                                                                                      CGCCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTG     <  3:44496/149‑1
                                                                                                                                                      CGCCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTG     <  3:59763/149‑1
                                                                                                                                                       GCCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTGG    >  1:249088/1‑149
                                                                                                                                                        CCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTGGT   <  1:207641/149‑1
                                                                                                                                                        CCAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTGGT   >  7:246636/1‑149
                                                                                                                                                         CAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTGGTT  <  4:176994/149‑1
                                                                                                                                                         CAAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTATCGAATCAGGATGCTGGTT  <  2:205420/149‑1
                                                                                                                                                                                                                                                                                                              
GTGCAGATCACCAATGGCGTGGTGCTGGCGATTCAACCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4433805‑4433959
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagcgccaAGGCGTCCGTCTGAAAGAACGGGCTGTGGCGCTGACCGGCATTGATCGTTCCAAGCGTATCAACACGTTCTGGCCATGCTTGGCCGGCGGCGAAGTGCTGTGCAATGGGTCGCCTTGGCCGGGGCGTGTCGAATCAGGATGCTGGTT  <  NC_002947/4433985‑4433839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.