New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4488679	NA (NA)	6 (0.160) +CACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCAC	6/158	NT	16.6%	intergenic (+32/+539)	PP_3981/PP_3982	transposase/hypothetical protein
	?	NC_002947	= 5035611	49 (0.830)					intergenic (+115/‑582)	PP_4439/PP_4441	transposase/transposase

AATGGGCATGATCCGTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4488540‑4488679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCCCTTCGTGAATTGATTTGTGGTCACGCAGGGAGTGCTC  <  NC_002947/5035611‑5035572                                                                                                                                                |||||||||||||||||||||||||||||||||||||||||||||||||                                         AATGGGCATGATCCGTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCG                                                                                   <  1:376537/148‑1    GGGCATGATCCGTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCT                                                                               >  7:78649/1‑149    GGGCATGATCCGTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCT                                                                               >  7:196298/1‑149      GCATGATCCGTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGC                                                                             >  1:14455/1‑149           ATCCGTATGCCTATCTCAAAGATGTGTTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGCCGGACGCTTACTCACCATCGGCCTGCGTGC                                                                         <  1:30226/148‑1            TCCGTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCC                                                                        <  1:364448/148‑1               GTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCATAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATC                                                                    >  8:345528/1‑149                    CCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGAT                                                               <  8:271413/149‑1                          TCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACT                                                          >  6:295489/1‑148                           CAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATAAGTGCGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACCCTTACTCACCATCGCACTGCGTGCCGATCTCTATGCACTC                                                         >  7:81820/1‑148                            AAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTC                                                         <  1:275384/147‑1                            AAAGATGTGCTAACTCCGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGCTGCCTGCCTAACA‑‑‑TACGCAACGTGAGTTGGGGGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTC                                                         <  1:270324/147‑1                                   TGCTAACTCGGTTGCCAACACAGCGGTCCAGTTAGATCGGGCATCTGCTGCGAAATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCTGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAG                                                <  3:31889/149‑1                                       AACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCG                                                  >  5:260141/1‑143                                       AACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCG                                                  <  6:260141/143‑1                                       AACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCAAATCATTGGGTGCCTGCCTAACTTCCTAAGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAG                                                <  1:117307/148‑1                                        ACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCA                                           >  1:281546/1‑149                                          TCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGAT                                                               >  8:65477/1‑127                                          TCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCACGCAGGCCGATgg                                                                   >  6:165251/1‑121                                          TCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCACGCAGGCCGATgg                                                                   <  5:165251/123‑3                                            GGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCC                                       <  2:14455/149‑1                                             GTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCC                                      >  1:290071/1‑149                                                   AACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGA                                              <  7:241224/135‑1                                                   AACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGA                                              >  8:241224/1‑135                                                             GCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTTCGTGAATTGATTTG                      >  4:299434/1‑149                                                                 GTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGTCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTTCGTGAATTGATTTGTGGT                  >  7:21190/1‑149                                                                           GCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGTCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTTCGTGAATTGATTTGTGGTCACGCAGGGA        <  8:21190/149‑1                                                                              GCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTTCGTGAATTGATTTGTGGTCACGCAGGGAGTG     <  3:299434/149‑1                                                                                       ACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTTCGTGAATTGATTTGTGGTCACGCAGGGAGTGCTC  >  6:182771/1‑143                                                                                       ACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACTCACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTTCGTGAATTGATTTGTGGTCACGCAGGGAGTGCTC  <  5:182771/143‑1                                                                                                                                                |||||||||||||||||||||||||||||||||||||||||||||||||                                         AATGGGCATGATCCGTATGCCTATCTCAAAGATGTGCTAACTCGGTTGCCAACACAGCGGGCCAGTGAGATCGGGCAGCTGCTGCCACATCAGTGGGTGCCTGCCTAACT‑‑‑TACGCAAGGTGAGTTGGGCGGACGCTTACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4488540‑4488679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCCCTTCGTGAATTGATTTGTGGTCACGCAGGGAGTGCTC  <  NC_002947/5035611‑5035572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.