| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4488679 | NA (NA) | 6 (0.160) +CACCATCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCAC |
6/158 | NT | 16.6% | intergenic (+32/+539) | PP_3981/PP_3982 | transposase/hypothetical protein |
| ? | NC_002947 | = 5035611 | 49 (0.830) | intergenic (+115/‑582) | PP_4439/PP_4441 | transposase/transposase | |||||
CCACATCAGTGGGTGCCTGCCTAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGTGATGATAG > NC_002947/5035473‑5035758 | ccACATCAGTGGGTGCCTGCCTAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAatgcatgc > 4:314598/1‑149 (MQ=255)ccACATCAGTGGGTGCCTGCCTAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAatgcatgc < 4:185038/149‑1 (MQ=255) gTGGGTGCCTGCCTAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCggg > 3:290790/1‑148 (MQ=255) cctgcctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCatgatg < 2:68559/148‑1 (MQ=255) cctgcctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATgg < 6:380657/149‑1 (MQ=255) ctgcctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCAGTCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATgg > 1:269476/1‑149 (MQ=255) gcctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCca > 4:344682/1‑149 (MQ=255) cctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGcc < 2:281546/147‑1 (MQ=255) cctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCcac < 4:290790/149‑1 (MQ=255) aCTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTg < 4:267396/149‑1 (MQ=255) aCTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTg > 3:27838/1‑149 (MQ=255) ttGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGggc > 6:118604/1‑149 (MQ=255) ttACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACtt > 1:24190/1‑149 (MQ=255) aCTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACtt < 5:118604/147‑1 (MQ=255) aCCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTtct < 8:78649/147‑1 (MQ=255) ccA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTctct > 5:191702/1‑148 (MQ=255) cGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGAtt < 4:27838/148‑1 (MQ=255) gCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGcc < 7:18862/94‑1 (MQ=255) gCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGcc > 8:18862/1‑94 (MQ=255) cGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAg > 8:13033/1‑149 (MQ=255) gATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGcatcat > 3:204819/1‑149 (MQ=255) gATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGcatcat > 7:264159/1‑149 (MQ=255) aTGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCatcatc < 2:269476/149‑1 (MQ=255) tCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCAttt > 3:316346/1‑148 (MQ=255) aaCATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAatgcat > 3:160644/1‑57 (MQ=255) aaCATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAatgcat < 4:160644/57‑1 (MQ=255) aaCATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTc < 4:316346/147‑1 (MQ=255) aaCATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCa < 4:312006/148‑1 (MQ=255) aaCATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCa > 3:312006/1‑148 (MQ=255) aggagCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCaa < 2:24190/149‑1 (MQ=255) gagCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAgtgctcctcgatgttgagtgcatcgagatcggcacgcaggccgatggtgagtaagcgtccgcccaactcaccttgcgtaagttaggcaggcacccactgatgt > 6:182771‑M2/1‑40 (MQ=255) gagCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAgtgctcctcgatgttgagtgcatcgagatcggcacgcaggccgatggtgagtaagcgtccgcccaactcaccttgcgtaagttaggcaggcacccactgatgt < 5:182771‑M2/143‑104 (MQ=255) cACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAgtgctcctcgatgttgagtgcatcgagatcggcacgcaggccgatggtgagtaagcgtccgcccaactcaccttgcgtaagttaggcaggcacccactgatgtggcagcagc < 3:299434‑M2/149‑113 (MQ=255) tCCCTGCGTGACCACAAATCAATTCACGAAGGGAgtgctcctcgatgttgagtgcatcgagatcgacacgcaggccgatggtgagtaagcgtccgcccaactcaccttgcgtaagttaggcaggcacccactgatgtggcagcagctgc < 8:21190‑M2/149‑116 (MQ=255) ccTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCgag > 5:69945/1‑148 (MQ=255) ccTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCgag > 6:113288/1‑148 (MQ=255) ccTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCgag > 1:166529/1‑148 (MQ=255) aCCACAAATCAATTCACGAAGGGAgtgctcctcgatgttgagtgcatcgagatcgacacgcaggccgatggtgagtaagcgtccgcccaactcaccttgcgtaagttaggcaggcacccactgatgtggcagcagctgcccgatctcac > 7:21190‑M2/1‑24 (MQ=255) caAATCAATTCACGAAGGGAgtgctcctcgatgttgagtgcatcgagatcggcacgcaggccgatggtgagtaagcgtccgcccaactcaccttgcgtaagttaggcaggcacccactgatgtggcagcagctgcccgatctcactggc > 4:299434‑M2/1‑20 (MQ=255) caAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGGAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAggggg < 3:314598/149‑1 (MQ=255) aTCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCg > 2:65887/1‑149 (MQ=255) aaTTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGAc < 7:13033/149‑1 (MQ=255) aaTTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGAc > 7:104260/1‑149 (MQ=255) ttCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGa < 5:113288/149‑1 (MQ=255) ttCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGa < 4:204819/149‑1 (MQ=255) tCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAg > 3:247798/1‑149 (MQ=255) cACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAg < 8:264159/148‑1 (MQ=255) cACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGt > 8:68987/1‑149 (MQ=255) aCGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCgaggag < 4:194353/128‑1 (MQ=255) aCGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCgaggag > 3:194353/1‑128 (MQ=255) aCGAAGCGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGt > 1:160723/1‑148 (MQ=255) cGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGtga < 4:248997/149‑1 (MQ=255) gAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGtgat < 8:104260/149‑1 (MQ=255) gAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGtgat > 5:149198/1‑149 (MQ=255) aaGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGAGCCACGCTACTTTTCTCTAAATCTAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGtgat > 6:145563/1‑148 (MQ=255) gggAgtgctcctcgatgttgagtgcatcgagatcggcacgcaggccgatggtgagtaagcgtccgcccaactcaccttgcgtaagttaggcaggcacccactgatgtggcagcagctgcccgatctcactggcccgctgtgttggcaac > 1:290071‑M2/1‑4 (MQ=255) ggAgtgctcctcgatgttgagtgcatcgagatcggcacgcaggccgatggtgagtaagcgtccgcccaactcaccttgcgtaagttaggcaggcacccactgatgtggcagcagctgcccgatctcactggcccgctgtgttggcaacc < 2:14455‑M2/149‑147 (MQ=255) gAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGTGATGATag < 6:191702/149‑1 (MQ=255) | CCACATCAGTGGGTGCCTGCCTAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTCACCA‑TCGGCCTGCGTGCCGATCTCGATGCACTCAACATCGAGGAGCACTCCCTGCGTGACCACAAATCAATTCACGAAGGGAAAATGCATGCGTGCGGGCATGATGGCCACACTGCAATGCTCCTAGGGGCGGCACGCTACTTTTCTCTAAATCGAGATTTTCCAGGCATCATCCATTTCATCTTCCAACCTGCCGAGGAGGGCCAGGGGGGCGGACGAGTGATGATAG > NC_002947/5035473‑5035758 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |