New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4658500	72 (1.220)	4 (0.070)	4/240	NT	5.7%	coding (1136/1782 nt)	nuoC	NADH‑quinone oxidoreductase subunit C/D
	?	NC_002947	= 4658517	65 (1.170)					coding (1153/1782 nt)	nuoC	NADH‑quinone oxidoreductase subunit C/D

ACCCCGGTGTTCTTCACCTTCACCGACCGCCAGCGCGCCTACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4658346‑4658500 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgtcgaGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGACCAGCTTGTCCCAGCCACGTGGCAGGTCGTGGGCGACGCCACCGATGCGGTACCAGGCCGGGTGCAGGCGGAAGCCGGTGATCGCTTCGATCACGGTGTAGGCGCGCTGGCGG  <  NC_002947/4658517‑4658372                                                                                                                                                                                                                                                                                                               ACCCCGGTGTTCTTCACCTTCACCGACCGCCAGCGCGCCTACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCA‑CCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTC                                                                                                                                                         <  5:316103/149‑1  CCCCGGTGTTCTTCACCTTCACCGACCGCCAGCGCGCCTACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTC                                                                                                                                                         >  5:359045/1‑149  CCCCGGTGTTCTTAACCTTAACCGACCGCCAGCGCGCCTACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGTTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGATGGGACAAGCTGGTCAAGGACTTC                                                                                                                                                         >  8:182882/1‑149    CCGGTGTTCTTCACCTTCACCGACCGCCAGCGCGCCTACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGT                                                                                                                                                       <  3:26494/149‑1     CGGTGTTCTTCACCTTCACCGACCGCCAGCGCGCCTACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGTC                                                                                                                                                      <  8:69366/149‑1     CGGTGTTCTTCACCTTCACCGACCGCCAGCGCGCCTACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGTC                                                                                                                                                      <  1:314935/149‑1                                         ACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTC                                                                                                                                                         >  5:42742/1‑110                                         ACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTC                                                                                                                                                         <  6:42742/110‑1                                                                     CCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGTCGAGGCGCTTGGGCAGCCATTCGACG                                                                                                                             <  5:205574/110‑1                                                                     CCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGTCGAGGCGCTTGGGCAGCCATTCGACG                                                                                                                             >  6:205574/1‑110                                                                       GCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGTCGAGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGA                                                                                                                   >  3:309474/1‑118                                                                       GCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGTCGAGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGA                                                                                                                   <  4:309474/118‑1                                                                                                                                                    TTCGTCGAGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGACCAGCTTGTCCCAGCCACGTGGCAGGTCGTGGGCGACGCCACCGATGCGGTACCAGGCCGGGTGCAGGCGGAAGCCGGTGATCGCTTCGATCACGGTGTAGGCGCGCT       >  3:253372/1‑149                                                                                                                                                       GTCGAGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGACCAGCTTGTCCCAGCCACGTGGCAGGTCGTGGGCGACGCCACCGATGCGGTACCAGGCCGGGTGCAGGCGGAAGCCGGTGATCGCTTCGATCACGGTGTAGGCGCGCTGGC    <  2:213945/149‑1                                                                                                                                                       GTCGAGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGACCAGCTTGTCCCAGCCACGTGGCAGGTCGTGGGCGACGCCACCGATGCGGTACCAGGCCGGGTGCAGGCGGAAGCCGGTGATCGCTTCGATCACGGTGTAGGCGCGCTGGC    >  7:182882/1‑149                                                                                                                                                         CGAGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGACCAGCTTGTCCCAGCCACGTGGCAGGTCGTGGGCGACGCCACCGATGCGGTACCAGGCCGGGTGCAGGCGGAAGCCGGTGATCGCTTCGATCACGGTGTAGGCGCGCTGGCGG  >  1:181085/1‑149                                                                                                                                                           AGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGACCAGCTTGTCCCAGCCACGTGGCAGGTCGTGGGCGACGCCACCGATGCGGTACCAGGCCGGGTGCAGGCGGAAGCCGGTGATCGCTT                            >  5:379667/1‑121                                                                                                                                                           AGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGACCAGCTTGTCCCAGCCACGTGGCAGGTCGTGGGCGACGCCACCGATGCGGTACCAGGCCGGGTGCAGGCGGAAGCCGGTGATCGCTT                            <  6:379667/121‑1                                                                                                                                                                                                                                                                                                               ACCCCGGTGTTCTTCACCTTCACCGACCGCCAGCGCGCCTACACCGTGATCGAAGCGATCACCGGCTTCCGCCTGCACCCGGCCTGGTACCGCATCGGTGGCGTCGCCCACGACCTGCCACGTGGCTGGGACAAGCTGGTCAAGGACTTCGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4658346‑4658500 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgtcgaGGCGCTTGGGCAGCCATTCGACGAAGTCCTTGACCAGCTTGTCCCAGCCACGTGGCAGGTCGTGGGCGACGCCACCGATGCGGTACCAGGCCGGGTGCAGGCGGAAGCCGGTGATCGCTTCGATCACGGTGTAGGCGCGCTGGCGG  <  NC_002947/4658517‑4658372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.