| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4683186 | 34 (0.580) | 3 (0.060) | 3/212 | NT | 7.9% | intergenic (+45/‑176) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 4683234 | 42 (0.860) | intergenic (+93/‑128) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein | |||||
GATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4683019‑4683186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgcTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGTG < NC_002947/4683234‑4683094 GATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCC > 8:754/1‑149 GTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGC > 6:300530/1‑149 ctGCCAAGCGCTTGAATGTGGAAATGTAGCAGCTCAAGCGCTGGAACCCTCGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACGTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGC < 7:352865/146‑1 CCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC > 8:81949/1‑149 CCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC < 5:300530/149‑1 CCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC < 7:81949/149‑1 CCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTAACAGGGGCTCCTTTGCAGCCCAATCGCGGGCACGCCag > 8:352865/1‑146 GGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGG < 4:316746/123‑1 GCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCC < 7:754/149‑1 AGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGC < 1:248669/133‑1 AGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGC > 2:248669/1‑133 TGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGC < 8:89667/56‑1 TGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGC > 7:89667/1‑56 GCCCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCT > 1:106914/1‑149 CCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCT < 2:268842/91‑1 CCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCT > 1:268842/1‑91 CCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCC > 7:33283/1‑80 CCATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCC < 8:33283/80‑1 CCATTCGCGGGCACGCCCGCTCCCACAGGTAAGACACCGGCTTAGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCAGCAAAGCAGCCCCTGTAACGACTCAACCCCCGAGGTAGACGGTCAGGGTCTGGCCTGG > 2:311471/1‑149 ATTCGCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTGGAGGACGGTGAAACCCCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCACCGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCT < 7:182110/149‑1 GCGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGA < 8:154494/148‑1 CGGGCACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGTGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGG < 1:329469/149‑1 ACGCCCGCTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGTG > 6:50191/1‑149 GATTCTCTGTACCTGGTGGCCAAGCGCTTCAATGTGGAAATGAAGCACCTCAAGCGCTGGAACCCACGCAGCGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4683019‑4683186‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccattcgcgggcacgcccgcTCCCACAGGTACGACACCGGCTTTGAGGACTGTGAAAAACCTCTGGGGGCGGGCGTGCCCGCGAATGGGCTGCAAAGCAGCCCCTGTAACGACTCAACGCCCGAGGTAGACGGTCAGGGTCTGGCCTGGCTTGAGGGCGTG < NC_002947/4683234‑4683094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |