New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4683186	34 (0.580)	3 (0.060)	3/212	NT	7.9%	intergenic (+45/‑176)	mltD/PP_4146	membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein
	?	NC_002947	= 4683234	42 (0.860)					intergenic (+93/‑128)	mltD/PP_4146	membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein

CACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTG  >  NC_002947/4683094‑4683382                                                                                                                                              |                                                                                                                                                     cACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgt                                                                                                                                              >  6:50191‑M2/1‑141 (MQ=255)      ccTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCACAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccg                                                                                                                                         <  1:329469‑M2/149‑14 (MQ=255)        tCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgc                                                                                                                                        <  8:154494‑M2/148‑15 (MQ=255)           aGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGGTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGGGTTTCACCGTCCTCCAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaat                                                                                                                                    <  7:182110‑M2/149‑19 (MQ=255)             ccaggccagACCCTGACCGTCTACCTCGGGGGTTGAGTCGTTACAGGGGCTGCTTTGCTGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCTAAGCCGGTGTCTTACCTGTGGGAgcgggcgtgcccgcgaatgg                                                                                                                                  >  2:311471‑M2/1‑129 (MQ=255)               aggccagACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgggc                                                                                                                                >  1:106914‑M2/1‑127 (MQ=255)                                      acGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGCGC‑ACGCCCGCCCCCAGAGGTTTTTAACAGTCCTCAAAGCCGGAGTCGTACCAGTCGGACCGCGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGcaaa                                                                                                         >  6:143278/2‑149 (MQ=255)                                        gggCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAAcc                                                                                                       >  3:294031/1‑149 (MQ=255)                                            gTTGAGTCGTTACAGGGGCTGCTTTGCAGCCAATTCGCGGGCGACGCCCGCCCCAACAGGTTTTTCACAGTACTCAAAGCCGGTGTCGTACCTGTGGGACCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAAacc                                                                                                      >  1:264484/1‑147 (MQ=38)                                             ttGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGc                                                                                                  <  2:207039/149‑1 (MQ=255)                                                  tCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCa                                                                                                                     <  7:61148/125‑1 (MQ=255)                                                  tCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCa                                                                                                                     >  8:61148/1‑125 (MQ=255)                                                         atgggCTGCAAAGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAACCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGGCTGCAAACCCAGCCACAGGAAAACCCTAGCCCCTCGCttgtt                                                                                      >  8:216298/3‑149 (MQ=37)                                                             gctgctTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTTTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCaa                                                                                  <  5:143278/149‑1 (MQ=255)                                                             gctgctTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCaa                                                                                  <  7:154494/149‑1 (MQ=255)                                                               tgctTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAAcc                                                                                >  8:29294/1‑149 (MQ=255)                                                                 ctTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAAcccc                                                                              >  7:219561/1‑149 (MQ=255)                                                                    tGCAGCCCATTCGCGGGC‑ACGCCCGCCCACAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCcca                                                                             <  2:329469/147‑1 (MQ=255)                                                                       aGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgg                                                                                                                                  >  1:268842‑M2/1‑71 (MQ=255)                                                                       aGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgg                                                                                                                                  <  2:268842‑M2/91‑21 (MQ=255)                                                                         cccATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTGTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGCATAACCCAAGCGCCTCTCTTATTCCAAACCCACCAAGCt                                                                      >  8:71942/1‑149 (MQ=38)                                                                            aTTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGt                                                                    >  5:146578/1‑148 (MQ=255)                                                                             ttCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTa                                                                  <  3:94925/149‑1 (MQ=255)                                                                                gcgGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACt                                                                <  4:294031/148‑1 (MQ=255)                                                                                  gggC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgg                                                                                                                                  <  8:33283‑M2/80‑21 (MQ=255)                                                                                  gggC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgg                                                                                                                                  >  7:33283‑M2/1‑60 (MQ=255)                                                                                   ggC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaacgcccgaggtagacggtcagggtctggcctggcttgagggc                                                            <  7:754‑M2/149‑91 (MQ=255)                                                                                    gC‑ACGCCGGCCCCCAGAGGTTTTTCACAGTCCTCAATGCGGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACt                                                           <  2:342735/149‑1 (MQ=255)                                                                                         gcccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaacgcccgaggtagacggtcagggtctggcct                                                                       <  1:248669‑M2/133‑80 (MQ=255)                                                                                         gcccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaacgcccgaggtagacggtcagggtctggcct                                                                       >  2:248669‑M2/1‑54 (MQ=255)                                                                                           ccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATc                                                      >  4:27591/1‑148 (MQ=255)                                                                                                cccAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGcc                                                <  3:27591/149‑1 (MQ=255)                                                                                                 ccAGAGGTTTTTCACAGTCCTCAAAGCCTGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTa                                                                  <  5:233022/130‑1 (MQ=255)                                                                                                 ccAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAAcc                                                                                                       <  5:48125/93‑1 (MQ=255)                                                                                                 ccAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAAcc                                                                                                       >  6:48125/1‑93 (MQ=255)                                                                                                 ccAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTACAACCCCACCAAGCTGTTa                                                                  >  6:233022/1‑130 (MQ=255)                                                                                                  cAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTTGGAGCGGGCGTGCCCGCGAATGGGACTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGccc                                               >  5:82954/1‑148 (MQ=255)                                                                                                   agagGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCACTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCACTCTTTTTCCACCCCCACCAAGCTGTTACTGTACTCGATCACAGccaca                                             >  4:254479/1‑146 (MQ=255)                                                                                                        tttttCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCct                                        <  7:29294/149‑1 (MQ=255)                                                                                                             cacaGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTgg                                    <  6:146578/148‑1 (MQ=255)                                                                                                               caGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATc                                 <  8:219561/149‑1 (MQ=255)                                                                                                               caGTCCTAAAAGGATGTGGCGTACCTGTTGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTTTAATCGATCAAAGCCCAACGCATCTGGATc                                 <  2:264484/149‑1 (MQ=255)                                                                                                                  tCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGa                              <  7:216298/149‑1 (MQ=255)                                                                                                                    cTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATg                            <  3:66192/149‑1 (MQ=255)                                                                                                                       aaaGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGG‑AAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGa                        >  8:85159/1‑149 (MQ=255)                                                                                                                        aaGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTgg                                    >  6:75388/1‑137 (MQ=255)                                                                                                                        aaGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTgg                                    <  5:75388/137‑1 (MQ=255)                                                                                                                           ccGGTGGCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGAttt                     <  8:182110/149‑1 (MQ=255)                                                                                                                                gtCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATAc                >  7:133164/1‑149 (MQ=255)                                                                                                                                 tCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACg               >  1:174046/1‑149 (MQ=255)                                                                                                                                   gTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTc             >  5:301234/1‑149 (MQ=255)                                                                                                                                   gTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGG‑AAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTc             <  7:85159/148‑1 (MQ=255)                                                                                                                                       cTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTcccc          >  4:240300/1‑148 (MQ=255)                                                                                                                                         gtgGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGAt                                  <  7:305494/122‑1 (MQ=255)                                                                                                                                         gtgGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACACGATCAAAGCCCAACCACTCTGGaa                                  >  8:305494/1‑121 (MQ=255)                                                                                                                                              aGCGGGCGTGCCCGAGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTACAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCctgctg  >  8:51078/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                     CACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGC‑ACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCTCCTGCTG  >  NC_002947/4683094‑4683382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.