| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4689028 = | 52 (0.880) | 4 (0.070) | 4/234 | NT | 8.0% | coding (929/1020 nt) | PP_4149 | ABC transporter permease |
| ? | NC_002947 | 4689061 = | 44 (0.810) | coding (962/1020 nt) | PP_4149 | ABC transporter permease | |||||
ACCTGGTCCCCGGTCACGAACTCCACGGCCAGGTCCCGCACTTCGATCAGGTTCTGTTCACTCATGTCACTTCCTCGGGTCGAAGGCGTCGCGGGCGGATTCGCCGATGAACACCAGCAGGCTCAGCATCAGCGCCAGCACGGCAAAGGCGCTGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4689185‑4689028‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgatgcTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGACGCCTTCGACCCGAGGAAGTGACATGAGTGAACAGAACCTGATCGAAGTGCGGGACCTGGCCGTGGAGTTCGTGACCGGGGACCAGGTCAACCGGGTGGTGGACGGCG > NC_002947/4689061‑4689205 ACCTGGTCCCCGGTCACGAACTCCACGGCCAGGTCCCGCACTTCGATCAGGATCTGTTCACTCATGTCACTTCCTCGGGTCGAAGGCGTCGCGGGCGGATTCGCCGATGAACACCAGCAGGCTCAGCATCAGCGCCAGCACGGCAAAGG > 1:90533/1‑149 CACGGCCAGGTCCCGCACTTCGATCAGGTTCTGTTCACTCATGTCACTTCCTCGGGTCGAAGGCGTCGCGGGCGGATTCGCCGATGAACACCAGCAGGCTCAGCATCAGCGCCAGCACGGCAAAG < 3:209810/125‑1 CACGGCCAGGTCCCGCACTTCGATCAGGTTCTGTTCACTCATGTCACTTCCTCGGGTCGAAGGCGTCGCGGGCGGATTCGCCGATGAACACCAGCAGGCTCAGCATCAGCGCCAGCACGGCAAAG > 4:209810/1‑125 GCTCAGCATCAGCGCCAGCACGGCAAAGGCGCTGATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCC < 1:85206/71‑1 GCTCAGCATCAGCGCCAGCACGGCAAAGGCGCTGATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCC > 2:85206/1‑71 TCAGCGCCAGCACGGCAAAGGCGCTGATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGACGCCTTC < 1:110618/74‑1 TCAGCGCCAGCACGGCAAAGGCGCTGATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGACGCCTTC > 2:110618/1‑74 GCGCTGATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGACGCCTTCGACCCGAGGAAGTGACATGAGTGAACAGAACCTGATCGAAGTGCGGGACCTGGCCGTGGAGTTCGTGACCGGGGACCAGGTCAACCGGGTGGTG > 1:241781/1‑148 ATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGACGCCTTCGACCCGAGGAAGTGACATGAGTGAACAGAACCTGATCGAAGTGCGGGACCTGGCCGTGGAGTTCGTGACCGGGGACCAGGTCAACCGGGTGGTGGACGGCG > 5:149734/1‑149 ACCTGGTCCCCGGTCACGAACTCCACGGCCAGGTCCCGCACTTCGATCAGGTTCTGTTCACTCATGTCACTTCCTCGGGTCGAAGGCGTCGCGGGCGGATTCGCCGATGAACACCAGCAGGCTCAGCATCAGCGCCAGCACGGCAAAGGCGCTGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4689185‑4689028‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgatgcTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGACGCCTTCGACCCGAGGAAGTGACATGAGTGAACAGAACCTGATCGAAGTGCGGGACCTGGCCGTGGAGTTCGTGACCGGGGACCAGGTCAACCGGGTGGTGGACGGCG > NC_002947/4689061‑4689205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |