| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4953460 = | 37 (0.630) | 8 (0.140) | 7/240 | NT | 19.3% | coding (972/1692 nt) | PP_4363 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 4953515 = | 32 (0.580) | coding (917/1692 nt) | PP_4363 | two‑component system sensor histidine kinase/response regulator | |||||
GGTATGCCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4953615‑4953460‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgtcaTCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAG > NC_002947/4953515‑4953660 GGTATGCCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑T > 3:235367/1‑149GGTATGCCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑T < 6:375347/149‑1 GTATGCCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TG < 2:132367/149‑1 CCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTC < 2:365984/149‑1 CTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCA < 8:183908/149‑1 TGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGT > 5:52505/1‑146 GATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑T < 1:331353/140‑1 GATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑T > 2:331353/1‑140 TGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCA > 8:160226/1‑120 TGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCA < 7:160226/120‑1 CGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCTCTTGGCCATCCACCGACAGGCGATA < 3:44843/144‑1 CGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATA > 4:44843/1‑144 ATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCAT > 1:258233/1‑147 ATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCAT > 7:255941/1‑147 GACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGG > 5:124908/1‑120 GACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGG < 6:124908/120‑1 CTGTCATCGATACGCTCCGAGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACATCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGAT < 6:268349/148‑1 TCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAG < 2:258233/149‑1 TCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAG < 1:44239/149‑1 TCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCAGCGCTGCATGCTGAGATTGAG < 7:105198/149‑1 ATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAG > 8:264584/1‑147 GGTATGCCTGATGGCTATCGCCTGTCGGTGGATGGCCAAGTGCTGTCGGCACTGAGTTCGCGGCACCTGCCGCTGGGCATTCTGGCCGCTGAGCGTTTCGATGACAGCACGGAGGTGTTGCCGCTGGCACCGGGCGAGC‑GC‑‑CTGTTGC‑TGCTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4953615‑4953460‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgtcaTCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAGGCATACCGCCATTCCACACCTCCACCGAGCCGCGCTGCATGCTGAGATTGAG > NC_002947/4953515‑4953660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |