New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4953460 =	37 (0.630)	8 (0.140)	7/240	NT	19.3%	coding (972/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	4953515 =	32 (0.580)					coding (917/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator

TCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAG  >  NC_002947/4953314‑4953608                                                                                                                                                   |                                                                                                                                                         tCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGa                                                                                                                                                        <  4:329390/149‑1 (MQ=255) ctcaatctcagcatgcagcgctgctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGa                                                                                                                                                        <  7:105198‑M1/3‑1 (MQ=255) ctcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgat                                                                                                                                                          >  8:264584‑M1/147‑147 (MQ=255) ctcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGa                                                                                                                                                        <  1:44239‑M1/3‑1 (MQ=255) ctcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGa                                                                                                                                                        <  2:258233‑M1/3‑1 (MQ=255)    cgTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGAcag                                                                                                                                                     <  7:121383/149‑1 (MQ=255)     atctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgatgtcggcactgagttcgcggcacctgccgctgggcattctggcctcggagcgtatcgaTGAcag                                                                                                                                                     <  6:268349‑M1/6‑1 (MQ=255)       ggCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGCACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGAcagca‑g                                                                                                                                                 >  5:267473/1‑149 (MQ=255)           gCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCaa                                                                                                                                              >  7:336071/1‑148 (MQ=255)             ccaccaAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAg                                                                                                                                           <  8:336071/149‑1 (MQ=255)              caccaAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAg‑‑g                                                                                                                                        >  6:308310/1‑149 (MQ=255)                       gCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGccc                                                                                                                              <  1:65297/149‑1 (MQ=255)                           cAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGt                                                                                                                           <  1:217744/148‑1 (MQ=255)                                 cAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCg                                                                                                                    >  3:233170/1‑149 (MQ=255)                                 cAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCg                                                                                                                    <  4:233170/149‑1 (MQ=255)                                   gCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCgg                                                                                                                   >  6:351257/1‑148 (MQ=255)                                              tCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGt                                                                                                       >  6:52505/1‑149 (MQ=255)                                                  acaacTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTg                                                                                                      <  6:223217/146‑1 (MQ=255)                                                  acaacTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTg                                                                                                      >  5:223217/1‑146 (MQ=255)                                                       ttCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACCCCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATc                                                                                              >  4:235367/1‑149 (MQ=255)                                                        atggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCAt                                                                                               >  1:258233‑M1/92‑147 (MQ=255)                                                        atggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCAt                                                                                               >  7:255941‑M1/92‑147 (MQ=255)                                                             tatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCg                                                                                             >  4:44843‑M1/87‑144 (MQ=255)                                                             tatcgcctgtcggtggatggccaagagctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCg                                                                                             <  3:44843‑M1/58‑1 (MQ=255)                                                                  gcgGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCa                                                                                    <  5:351257/148‑1 (MQ=255)                                                                   cgGTTGTCGGCCAGCACCTCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGc                                                                                  <  6:267473/149‑1 (MQ=255)                                                                    ggTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCg                                                                                 >  2:297606/1‑149 (MQ=255)                                                                      ttGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCt                                                                                                    <  4:372758/128‑1 (MQ=255)                                                                                 ccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTc                                                                                                 >  5:124908‑M1/67‑120 (MQ=255)                                                                                 ccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTc                                                                                                 <  6:124908‑M1/54‑1 (MQ=255)                                                                                         gCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAg                                                             <  5:308310/148‑1 (MQ=255)                                                                                           aGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTg                                                          >  8:276487/1‑149 (MQ=255)                                                                                                  tgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCACGGAGGTGTTGCCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCa                                                                                    >  8:160226‑M1/50‑120 (MQ=255)                                                                                                  tgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCACGGAGGTGTTGCCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCa                                                                                    <  7:160226‑M1/71‑1 (MQ=255)                                                                                                             aGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGa                                        >  5:391666/1‑149 (MQ=255)                                                                                                              ggCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGa                                        >  1:285389/1‑148 (MQ=255)                                                                                                                 aTTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAg                                     >  7:107301/1‑148 (MQ=255)                                                                                                                 aTTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAg                                     >  2:314206/1‑148 (MQ=255)                                                                                                                     cTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACtt                                >  6:67260/1‑149 (MQ=255)                                                                                                                           gtcgGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCAt                          <  6:391666/149‑1 (MQ=255)                                                                                                                               gcggTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCAc                      <  2:71017/149‑1 (MQ=255)                                                                                                                                   tATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGAc                  <  5:67260/149‑1 (MQ=255)                                                                                                                                     tCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAg                <  1:80678/149‑1 (MQ=255)                                                                                                                                       gATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCCAGAACTCAGTGCCGACAGCACTTGTCCATCCACCGACAGGc              >  7:304003/1‑149 (MQ=255)                                                                                                                                        aTCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGc                                                                  <  3:26760/96‑1 (MQ=255)                                                                                                                                        aTCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGc                                                                  >  4:26760/1‑96 (MQ=255)                                                                                                                                        aTCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGc              >  6:368822/1‑148 (MQ=255)                                                                                                                                        aTCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTCCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGc              >  5:285776/1‑148 (MQ=255)                                                                                                                                         tCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTg                               >  4:290560/1‑130 (MQ=255)                                                                                                                                         tCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGa            >  2:359174/1‑149 (MQ=255)                                                                                                                                            cacCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAg         <  7:276487/149‑1 (MQ=255)                                                                                                                                              ccGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGcc       <  5:368822/149‑1 (MQ=255)                                                                                                                                                gTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCAt     <  1:297606/149‑1 (MQ=255)                                                                                                                                                   TGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAg  <  8:183908‑M1/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                         TCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAGCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCA‑GCAACAG‑‑GC‑GCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCATCAG  >  NC_002947/4953314‑4953608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.