New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4976313	39 (0.660)	4 (0.070)	4/240	NT	8.3%	coding (458/1155 nt)	flgJ	peptidoglycan hydrolase FlgJ
	?	NC_002947	= 4976408	52 (0.940)					coding (363/1155 nt)	flgJ	peptidoglycan hydrolase FlgJ

CAATGCGCAGGCCGTTGTCCGGCACGGCGAAGGCCTTGGCTACTGCCTGACCGTCACGGGCAGGCACGGCGGCGTTATTGGCAGTTTCCGCCGACGGCACGATACCGGCCAACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGCCGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4976158‑4976313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcgtCGATAGCGGTGGCCCGGCATTGTGGGGCAACAAGGTGGCGGAGCCAGCGCATGCCATGGCCTCGTCCGCTACGCGCAACGACGTTGCTGCACTCAACGCGCGGCGCCTGGCCCTGCCAAGCAAACTCACCGACCGCCTGTTGG  <  NC_002947/4976408‑4976266                                                                                                                                                                                                                                                                                                             CAATGCGCAGGCCGTTGTCCGGCACGGCGAAGGCCTTGGCTACTGCCTGACCGTCACGGGCAGGCACGGCGGCGTTATTGGCAGTTTCCGCCGACGGCACGATACCGGCCAACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGC                                                                                                                                                        <  4:99748/149‑1      CGCAGGCCGTTGTCCGGCACGGCGAAGGCCTTGGCTACTGCCTGACCGTCACGGGCAGGCACGGCGGCGTTATTGGCAGTTTCCGCCGACGGCACGATACCGGCCAACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGCCGCGC                                                                                                                                                   >  7:74639/1‑149        CAGGCCGTTGTCCGGCACGGCGAAGGCCTTGGCTACTGCCTGACCGTCACGGGCAGGCACGGCGGCGTTATTGGCAGTTTCCGCCGACGGCACGATACCGGCCAACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGCCGCGCGT                                                                                                                                                 <  3:78449/149‑1                                               CTGACAGTCACGGGCAGGCACGGCGGCGTTATTGGCAGTTTCCGCCGACGGCACGATACCGGCCAACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGCCGCGCGTCGATAGCGGTGGCCCGGCATTGTGGGGCAACAAGGTGGC                                                                                                          >  5:230165/1‑149                                                                                                   ACGATACCGGCCAACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGCCGCGCGTCGATAGCGGTGGCCCGGCATTGTGGGGCAACAAGGTGGCGGAGCCAGCGCATGCCATGGCCTCGTCCGCTACGCGCAACGACGTTGCTGCA                                                      >  2:369974/1‑149                                                                                                              CAACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGCCGCGCGTCGATAGCGGTGGCCCGGCATTGTGGGGCAACAAGGTGGCGGAGCCAGCGCATGCCATGGCCTCGTCCGCTACGCGCAACGACGTTGCTGCACTCAACGCGCG                                           <  6:230165/149‑1                                                                                                               AACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGCCGCGCGTCGATAGCGGTGGCCCGGCATTGTGGGGCAACAAGGTGGCGGAGCCAGCGCATGCCATGGCCTCGTCCGCTACGCGCAACGACGTTGCTGCACTCAACGCGCGG                                          <  1:369974/149‑1                                                                                                                                                     CCGCGCGTCGATAGCGGTGGCCCGGCATTGTGGGGCAACAAGGTGGCGGAGCCAGCGCATGCCATGGCCTCGTCCGCTACGCGCAACGACGTTGCTGCACTCAACGCGCGGCGCCTGGCCCTGCCAAGCAAACTCACCGACCGCCTGTT    <  1:377610/149‑1                                                                                                                                                       GCGCGTCGATAGCGGTGGCCCGGCATTGTGGGGCAACAAGGTGGCGGAGCCAGCGCATGCCATGGCCTCGTCCGCTACGCGCAACGACGTTGCTGCACTCAACGCGCGGCGCCTGGCCCTGCCAAGCAAACTCACCGACCGCCTGTTGG  <  1:154241/149‑1                                                                                                                                                                                                                                                                                                             CAATGCGCAGGCCGTTGTCCGGCACGGCGAAGGCCTTGGCTACTGCCTGACCGTCACGGGCAGGCACGGCGGCGTTATTGGCAGTTTCCGCCGACGGCACGATACCGGCCAACAGGCGGTCGGTGAGTTTGCTTGGCAGGGCCAGGCGCCGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4976158‑4976313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcgtCGATAGCGGTGGCCCGGCATTGTGGGGCAACAAGGTGGCGGAGCCAGCGCATGCCATGGCCTCGTCCGCTACGCGCAACGACGTTGCTGCACTCAACGCGCGGCGCCTGGCCCTGCCAAGCAAACTCACCGACCGCCTGTTGG  <  NC_002947/4976408‑4976266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.