New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5237877 =	71 (1.200)	4 (0.070)	4/248	NT	5.7%	coding (337/387 nt)	PP_4614	hypothetical protein
	?	NC_002947	5237910 =	63 (1.100)					coding (370/387 nt)	PP_4614	hypothetical protein

GGCGTTCTCGATCCTGGTGGTGCGCTACGCTTCGTACCGCTACCCCTCGACCAAGGTGCTGGACGCCAACGGCAAGGCAGTGGAGGAGGGCAAGTAGCCCTCAATTGGCAACAAAATGGCGCGGCTCGTGGCGGGCGTCACGGGTCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5238027‑5237877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCAGCACCTTGGTCGAGGGGTAGCGGTACGAAGCGTAGCGCACCACCAGGATCGAGAACGCCAGCAACAGGATGCCGCCGCACAGGTACAG  >  NC_002947/5237910‑5238056                                                                                                                                                                                                                                                                                                            GGCGTTCTCGATCCTGGTGGTGCGCTACGCTTCGTACCGCTACCCCTAGACCAAGGTGCTGGACGCCAACGGCAAGGCAGTGGAGGAGGGCAAGTAGCCCTCAATTGGCAACAAAATGGCGCGGCTCGTGGCGGGCGTCACGGGTCAGC                                                                                                                                                       >  4:141921/1‑149                                                                                                            GCAACAAAATGGCGCGGCTCGTGGCGGGCGTCACGGGTCAGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCAGCACCTTGGTCGAGGGGTAGCGGTACGAAGCGTAGCGCACCACCAG                                            >  5:151288/1‑149                                                                                                              AACAAAATGGCGCGGCTCGTGGCGGGCGTCACGGGTCAGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCAGCACCTTGGTCGAGGGGTAGCGGTACGAAGCGTAGCGCACCACCAGG                                           <  1:349664/148‑1                                                                                                              AACAAAATGGCGCGGCTCGTGGCGGGCGTCACGGGTCAGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCAGCACCTTGGTCGAGGGGTAGCGGTACGAAGCGTAGCGCACCACCAGG                                           >  2:349664/1‑148                                                                                                                   AATGGCGCGGCTCGTGGCGGGCGTCACGGGTCAGCGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCAGCACCTTGGTCGAGGGGTAGCGGTACGAAGCGTAGCGCACCACCAGGATC                                        >  3:149355/1‑146                                                                                                                                                    GCGCCATATTGTTGCCAATTGAGCGCTACTTGCCATCCTCCACTGCCTTGCCGATGGCGTCCAGCACCTTGGTCCAGGGCTAGCGGTACGAAGCGTACCGCACCACCAGGATCGAGAACGCCAGCAACAGGATGCCGCCGCACAGGTA     >  8:245044/1‑148                                                                                                                                                     CGCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCAGCACCTTGGTCGAGGGGTAGCGGTACGAAGCGTAGCGCACCACCAGGATCGAGAACGCCAGCAACAGGATGCCGCCGCACAGGTA     >  3:366830/1‑147                                                                                                                                                      GCCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCAGCACCTTGGTCGAGGGGTAGCGGTACGAAGCGTAGCGCACCACCAGGATCGAGAACGCCAGCAACAGGATGCCGCCGCACAGGTACAG  <  4:366830/149‑1                                                                                                                                                                                                                                                                                                            GGCGTTCTCGATCCTGGTGGTGCGCTACGCTTCGTACCGCTACCCCTCGACCAAGGTGCTGGACGCCAACGGCAAGGCAGTGGAGGAGGGCAAGTAGCCCTCAATTGGCAACAAAATGGCGCGGCTCGTGGCGGGCGTCACGGGTCAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5238027‑5237877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCATTTTGTTGCCAATTGAGGGCTACTTGCCCTCCTCCACTGCCTTGCCGTTGGCGTCCAGCACCTTGGTCGAGGGGTAGCGGTACGAAGCGTAGCGCACCACCAGGATCGAGAACGCCAGCAACAGGATGCCGCCGCACAGGTACAG  >  NC_002947/5237910‑5238056

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.