New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5244969	53 (0.900)	4 (0.070)	4/248	NT	7.4%	coding (376/834 nt)	hmgR	Hmg transcriptional repressor
	?	NC_002947	= 5245017	49 (0.860)					coding (424/834 nt)	hmgR	Hmg transcriptional repressor

GGGGCGCGAGGCATTGCGGGTGGGGCTGGCGGCGCTGGGCAGCATCGATGTGCTGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5244818‑5244969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaCCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTACCACCGTG  <  NC_002947/5245017‑5244956                                                                                                                                                                                                                        tGGGCGCGAGGCATTGCGGGTGTGGCTGGCGGCGCTGGGCAGCATCGATGTGCTGAAGGTGGCGGCGATGCCGTTGTCGGAGTTGCGAGGTGAGCTCAACGAAAGCTGCTTGATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAA                                                                   <  4:106638/148‑1  GGGCGCGAGGCATTGCGGGTGGGGCTGGCGGCGCTGGGCAGCATCGATGTGCTGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAG                                                                  >  5:380582/1‑149                                                        AAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATG              <  1:379904/147‑1                                                         AGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCT            <  2:355639/148‑1                                                                                CAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTA          >  3:171584/1‑127                                                                                CAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTA          <  4:171584/127‑1                                                                                                                                                       CACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTACCACCGTG  <  7:136136/64‑1                                                                                                                                                       CACCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTACCACCGTG  >  8:136136/1‑64                                                                                                                                                                                                                        GGGGCGCGAGGCATTGCGGGTGGGGCTGGCGGCGCTGGGCAGCATCGATGTGCTGAAGGTGGCGGCGATGCCGTTGTCGCAGTTGCGAGATGAGCTCAACGAAAGCTGCTTCATCGCCGTGTGGGGCAACCAGGGGGCCACGGTGGTAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5244818‑5244969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcaCCGAACCGATCTGGGTCACCACGGTGACCGCGCGCACGGCAGGTTCGATGCTTACCACCGTG  <  NC_002947/5245017‑5244956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.