| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5291873 | 61 (1.030) | 3 (0.050) | 3/244 | NT | 5.3% | intergenic (+103/+89) | PP_4665/mmsB | hypothetical protein/3‑hydroxyisobutyrate dehydrogenase |
| ? | NC_002947 | = 5291947 | 49 (0.870) | intergenic (+177/+15) | PP_4665/mmsB | hypothetical protein/3‑hydroxyisobutyrate dehydrogenase | |||||
GTACGTGGGAAGTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5291721‑5291873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggacTTCATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGATTTTTTTGTCCACGCTTACAGGTAGTGCGCGGCCGTGGTAGGAGCGGGTTCACCCGCGAATGCTACAGAAGCCTCACC < NC_002947/5291947‑5291803 GTACGTGGGAAGTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGT < 1:65082/149‑1GTACGTGGGAAGTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGT < 3:42231/149‑1GTACGTGGGAAGTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGCCCGCGCACTACCTGTAAGCGT > 8:304630/1‑149 GGAAGTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACTT > 1:379671/1‑148 CAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACTTCATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAA < 2:379671/149‑1 CAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACTTCATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGG > 4:41070/1‑147 TTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGG > 3:11949/1‑87 TTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGG < 4:11949/87‑1 GGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACTTCATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGATTTTTTTGTCC < 3:41070/149‑1 GGACTTCATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGATTTTTTTGTCCACGCTTACAGGTAGTGCGCGGCCGTGGTAGGAGCGGGTTCACCCGCGAATGCTACAGAAGCCTCACC > 3:47917/1‑149 GTACGTGGGAAGTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5291721‑5291873‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggacTTCATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGATTTTTTTGTCCACGCTTACAGGTAGTGCGCGGCCGTGGTAGGAGCGGGTTCACCCGCGAATGCTACAGAAGCCTCACC < NC_002947/5291947‑5291803 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |