New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5291873	61 (1.030)	3 (0.050)	3/244	NT	5.3%	intergenic (+103/+89)	PP_4665/mmsB	hypothetical protein/3‑hydroxyisobutyrate dehydrogenase
	?	NC_002947	= 5291947	49 (0.870)					intergenic (+177/+15)	PP_4665/mmsB	hypothetical protein/3‑hydroxyisobutyrate dehydrogenase

GGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGTTGGTGTGCCTGGCGTGCCG  >  NC_002947/5291803‑5292092                                                                                                                                                 |                                                                                                                                                   ggTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAgtcc                                                                                                                                                >  3:47917‑M2/1‑145 (MQ=255)       gCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACctct                                                                                                                                          >  3:276084/1‑149 (MQ=255)       gCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACctct                                                                                                                                          >  7:270693/1‑149 (MQ=255)              tAGCATTCGCGGTTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCAt                                                                                                                                     <  7:304630/147‑1 (MQ=255)              tAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATc                                                                                                                                    >  4:365261/1‑148 (MQ=255)                gCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCaa                                                                                                                                  <  4:276084/148‑1 (MQ=255)                        gggTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTg                                                                                                                         >  2:138198/1‑149 (MQ=255)                         ggTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGc                                                                                                                        >  3:93545/1‑149 (MQ=255)                           tGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGa                                                                                                                      <  4:93545/149‑1 (MQ=255)                              aCCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATa                                                                                                                    <  5:32649/148‑1 (MQ=255)                                  gCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCt                                                                                                              >  8:183802/1‑149 (MQ=255)                                      cTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCAt                                                                                                                                     <  3:265358/123‑1 (MQ=255)                                      cTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTcgac                                                                                                          <  8:223574/149‑1 (MQ=255)                                      cTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTcgac                                                                                                          >  6:339261/1‑149 (MQ=255)                                      cTACAACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCAt                                                                                                                                     >  4:265358/1‑123 (MQ=255)                                       tACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTcgac                                                                                                          >  1:199662/1‑148 (MQ=255)                                        aCCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTcgacga                                                                                                        >  2:162056/1‑149 (MQ=255)                                            cGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGc                                                                                                    >  1:145442/1‑149 (MQ=255)                                            cGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGc                                                                                                    <  2:145442/149‑1 (MQ=255)                                               ccGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCga                                                                                                 <  2:199662/149‑1 (MQ=255)                                                         ccTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCtt                                                                                        <  8:270693/148‑1 (MQ=255)                                                           tGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGc                                                                                                    >  4:241501/1‑134 (MQ=255)                                                           tGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGc                                                                                                    <  3:241501/134‑1 (MQ=255)                                                           tGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGcc                                                                                     >  3:301796/1‑149 (MQ=255)                                                            gTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCa                                                                                    >  4:133791/1‑149 (MQ=255)                                                               aGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCAcc                                                                                  >  2:8667/1‑148 (MQ=255)                                                                gCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTcga                                                                                                           >  1:367224/1‑122 (MQ=255)                                                                gCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTcga                                                                                                           <  2:367224/122‑1 (MQ=255)                                                                    ggACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAgtccacgcttacaggtagtgcgcggccgtggtaggagcgggttcacccgcgaatgctacagaagcctcacc                                                                             <  3:41070‑M2/149‑72 (MQ=255)                                                                    ggACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGc                                                                                                                        <  2:333505/106‑1 (MQ=255)                                                                    ggACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGc                                                                                                                        >  1:333505/1‑106 (MQ=255)                                                                        aaaaaaaTCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACcctcgcctcg                                                                         >  1:49963/1‑148 (MQ=255)                                                                          aaaaaTCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTcga                                                                                                           >  6:359339/1‑112 (MQ=255)                                                                          aaaaaTCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTcga                                                                                                           <  5:359339/112‑1 (MQ=255)                                                                          aaaaaTCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGAATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAg                                                                      >  4:99524/1‑149 (MQ=255)                                                                           aaaaTCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAgg                                                                     <  4:301796/149‑1 (MQ=255)                                                                                    gAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGcc                                                            <  4:253937/149‑1 (MQ=255)                                                                                     aGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCt                                                           >  5:367470/1‑149 (MQ=255)                                                                                      gCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTg                                                          <  3:133791/149‑1 (MQ=255)                                                                                       cAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTgg                                                         <  5:339261/149‑1 (MQ=255)                                                                                         gACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTa                                                       >  4:144681/1‑149 (MQ=255)                                                                                          aCGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTAc                                                      <  7:183802/149‑1 (MQ=255)                                                                                                ttCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAgtccacgcttacaggtagtgcgcggccgtggtaggagcgggttcacccgcgaatgctacagaagcctcaccgccgcattagcaggtaaacccgcgcctg                                                 <  2:379671‑M2/149‑100 (MQ=255)                                                                                                  cccTCTTGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAgctgc                                                <  1:283484/147‑1 (MQ=255)                                                                                                  cccTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAgtccacgcttacaggtagtgcgcggccgtggtaggagcgggttcacccgcgaatgctacagaagcctcaccgccgcattagcaggtaaacccgcgcctg                                                 >  4:41070‑M2/1‑48 (MQ=255)                                                                                                     tctGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACcctcgcctc                                                                          <  7:204962/118‑1 (MQ=255)                                                                                                     tctGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACcctcgcctc                                                                          >  8:204962/1‑118 (MQ=255)                                                                                                                    cAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAAt                            >  7:144717/1‑149 (MQ=255)                                                                                                                     agagGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATc                           <  1:8667/149‑1 (MQ=255)                                                                                                                       agGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCAc                         <  6:367470/149‑1 (MQ=255)                                                                                                                         ggAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAGGCCCTCGACGATGGCCGAGAAGTCATTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGATGGGCCACGGCACCGAGAATCAcc                        >  1:294394/1‑149 (MQ=255)                                                                                                                         ggAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCg                       >  8:78939/1‑149 (MQ=255)                                                                                                                           aaGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGt                     >  6:212100/1‑149 (MQ=255)                                                                                                                             ggCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGTTg                   <  3:144681/149‑1 (MQ=255)                                                                                                                              gCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCTTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGTTgg                  >  1:348883/1‑149 (MQ=255)                                                                                                                                                aagtccacgcttacaggtagtgcgcggccgtggtaggagcgggttcacccgcgaatgctacagaagcctcaccgccgcattagcaggtaaacccgcgcctgcaagtcaggcgaagacgaaatacttacgtacagtctcgaccacttcc  >  1:379671‑M2/1‑2 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACGCCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATA‑ACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGTTGGTGTGCCTGGCGTGCCG  >  NC_002947/5291803‑5292092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.