New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5361814	48 (0.810)	3 (0.050)	3/244	NT	5.3%	coding (546/756 nt)	tpiA	triose phosphate isomerase
	?	NC_002947	= 5361846	62 (1.100)					coding (514/756 nt)	tpiA	triose phosphate isomerase

ACCAATGAGACCCCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5361661‑5361814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggccATCGGTACGGGCCTTACGGCCACGCCACAGCAGGCCCAGGATGTGCACGCCGCCATCCGCGGCCAGTTGGCGGCAGAAGATGCTGAAGTGGCTGCGAAGGTGCAGTTGCTATACGGCGGCAGCGTGAAGGCGGCCAATGCGGCCGAA  <  NC_002947/5361846‑5361700                                                                                                                                                                                                                                                                                                               ACCAATGAGACCCCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCT                                                                                                                                                          >  8:72816/1‑149  CCAATGAGACCCCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTG                                                                                                                                                         <  1:185801/149‑1   CAATGAGACCCCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGG                                                                                                                                                        <  1:8024/149‑1            CCCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTG                                                                                                                                                         <  3:132889/139‑1            CCCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTG                                                                                                                                                         >  4:132889/1‑139                                             CCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCATCGGTACGGGCCTTACGGCCACGCCACAGCAGGCCCAG                                                                                                              <  3:310103/149‑1                                                                                        CTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCATCGGTACGGGCCTTACGGCCACGCCACAGCAGGCCCAGG                                                                                                             >  3:118217/1‑107                                                                                        CTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCATCGGTACGGGCCTTACGGCCACGCCACAGCAGGCCCAGG                                                                                                             <  4:118217/107‑1                                                                                                                                                         CCATCGGTACGGGCCTTACGGCCACGCCACAGCAGGCCCAGGATGTGCACGCCGCCATCCGCGGCCAGTTGGCGGCAGAAGATGCTGAAGTGGCTGCGAAGGTGCAGTTGCTATACGGCGGCAGCGTGAAGGCGGCCAATGCGGCCGAA  <  7:44461/149‑1                                                                                                                                                                                                                                                                                                               ACCAATGAGACCCCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5361661‑5361814 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggccATCGGTACGGGCCTTACGGCCACGCCACAGCAGGCCCAGGATGTGCACGCCGCCATCCGCGGCCAGTTGGCGGCAGAAGATGCTGAAGTGGCTGCGAAGGTGCAGTTGCTATACGGCGGCAGCGTGAAGGCGGCCAATGCGGCCGAA  <  NC_002947/5361846‑5361700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.