New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5361814	48 (0.810)	3 (0.050)	3/244	NT	5.3%	coding (546/756 nt)	tpiA	triose phosphate isomerase
	?	NC_002947	= 5361846	62 (1.100)					coding (514/756 nt)	tpiA	triose phosphate isomerase

CCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGCCCGACAACTTCGAGCGTCTTGCCAGCCTCGCGC  >  NC_002947/5361673‑5361961                                                                                                                                              |                                                                                                                                                    cccATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCtgtg                                                                                                                                              >  5:58159/1‑149 (MQ=255)  ccATCGATTTCCGGCATGCCGAACAGTTCGGGCGCATTGGGCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGGAGCCACTTCCGCATCTTCTGCCGCCTACTGTCGGCGGATGGCGGCGTGCACATCCTGGGCCTGCTgtgg                                                                                                                                             <  2:283895/149‑1 (MQ=255)             cGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTaa                                                                                                                                  <  7:72816/149‑1 (MQ=255)                      gAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTAc                                                                                                                         >  5:185973/1‑149 (MQ=255)                            ttCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATgg                                                                                                                   <  7:44461‑M2/149‑3 (MQ=255)                             tCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGAt                                                                                                                     >  5:350568/1‑146 (MQ=255)                             tCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGAt                                                                                                                     <  6:350568/146‑1 (MQ=255)                                 ccGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCatcggtacgggccttacggccacgccacagcaggcccag                                                                                                              <  3:310103‑M1/149‑40 (MQ=255)                                  cGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATa                                                                                                             <  8:265762/149‑1 (MQ=255)                                          ccgccTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCa                                                                                                     <  6:185973/149‑1 (MQ=255)                                          ccgccTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCa                                                                                                     >  4:358336/1‑149 (MQ=255)                                                 cACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGc                                                                                                <  2:179945/147‑1 (MQ=255)                                                         cgccgTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCa                                                                                      <  7:89258/149‑1 (MQ=255)                                                         cgccgTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCCGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCa                                                                                      >  7:23977/1‑149 (MQ=255)                                                          gccgTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCAt                                                                                     >  3:82342/1‑149 (MQ=255)                                                                taGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCaa                                                                               <  4:13095/149‑1 (MQ=255)                                                                  gCAACTGCACCTTCGCAGCCTCTTCATCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCaaaa                                                                             <  1:48988/149‑1 (MQ=255)                                                                  gCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCaa                                                                               >  8:341178/1‑147 (MQ=255)                                                                    aaCTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGc                                                                           <  2:247223/149‑1 (MQ=255)                                                                     aCTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGcc                                                                          <  7:117457/149‑1 (MQ=255)                                                                         cACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCtt                                                                        <  2:35243/147‑1 (MQ=255)                                                                            cTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCatcggtacgggccttacggccacgccacagcaggcccagg                                                                                                             >  3:118217‑M1/1‑67 (MQ=255)                                                                            cTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCatcggtacgggccttacggccacgccacagcaggcccagg                                                                                                             <  4:118217‑M1/107‑41 (MQ=255)                                                                             ttCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCATAAGCCTTAACAcc                                                                  >  6:385976/1‑149 (MQ=255)                                                                             ttCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACAcc                                                                  >  5:173599/1‑149 (MQ=255)                                                                                gCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCg                                                                 <  5:24636/147‑1 (MQ=255)                                                                                gCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCg                                                                 >  6:24636/1‑147 (MQ=255)                                                                                gCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGaa                                                               <  6:58159/149‑1 (MQ=255)                                                                                  aGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATg                                                             >  5:151343/1‑149 (MQ=255)                                                                                    ccACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCt                                                           >  6:150702/1‑149 (MQ=255)                                                                                       cTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCg                                                        <  7:341178/149‑1 (MQ=255)                                                                                          cAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCCGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCga                                                       <  8:23977/147‑1 (MQ=255)                                                                                            gCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCgatgat                                                   <  8:44461/149‑1 (MQ=255)                                                                                             cATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCgatgat                                                   >  6:129780/1‑148 (MQ=255)                                                                                                 ttctGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGc                                              >  4:312839/1‑149 (MQ=255)                                                                                                  tctGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCt                                             >  4:241038/1‑149 (MQ=255)                                                                                                  tctGCCGCCAACTGGCCGCCGATGGCGGCCTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGCCCCGTACCGATGGCCCATACAGGCTCATAGGCAAATACTGCATCGGCAAAAGCCTTAACACCTAAAGCTTCGAACAAACTGCt                                             >  7:122269/1‑149 (MQ=255)                                                                                                   ctGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGc                                              <  5:385976/147‑1 (MQ=255)                                                                                                        gccAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTGATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGGTTAGTTg                                       >  7:178940/1‑149 (MQ=255)                                                                                                             cTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGcc                                  <  3:358336/149‑1 (MQ=255)                                                                                                                     ggATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGCCCGACAACt                          <  5:129780/149‑1 (MQ=255)                                                                                                                       aTGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGCCCGACAACTTc                        <  4:82342/149‑1 (MQ=255)                                                                                                                        tGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGCCCGACAACTTc                        >  6:87449/1‑148 (MQ=255)                                                                                                                          gcggcgTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGCCCGACAACTTCGa                      <  5:87449/148‑1 (MQ=255)                                                                                                                          gcggcgTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGCCCGACAACTTCGa                      <  3:312839/148‑1 (MQ=255)                                                                                                                                  cacaTCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTAGATGATACTCCTAAGTTGACGACCGCCAAATTCGAGCTTCTTGc             >  6:294625/1‑149 (MQ=255)                                                                                                                                   acaTCGTTGGCCTGCTGTGGCTTGGCCGTTTGGCCCGTACCGATGGCCCATACAGGGTCATAGGCAATTACTGCATCGGCAAAAGCCTTTACACCGAATGCTTCGATGATACTGCTTAGTTGACGGCCGACAACTTCGAGCGTCTTGcc            <  8:122269/149‑1 (MQ=255)                                                                                                                                   acaTCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAacac                                                                   >  4:176226/1‑94 (MQ=255)                                                                                                                                   acaTCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAacac                                                                   <  3:176226/94‑1 (MQ=255)                                                                                                                                   acaTCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCt                                                           >  4:96616/1‑102 (MQ=255)                                                                                                                                   acaTCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCt                                                           <  3:96616/102‑1 (MQ=255)                                                                                                                                   acaTCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGCCCGACAACTTCGAGCGTCTTGc             >  2:154532/1‑148 (MQ=255)                                                                                                                                       ccTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATggcccaggatgtgcacgccgccatccgcggccagttggcggcagaagatgctgaagtggctgcgaag                                                  <  4:118217‑M2/107‑68 (MQ=255)                                                                                                                                       ccTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATggcccaggatgtgcacgccgccatccgcggccagttggcggcagaagatgctgaagtggctgcgaag                                                  >  3:118217‑M2/1‑40 (MQ=255)                                                                                                                                        cTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATggcccaggatgtgcacgccgccatccgcggccagttggcggcagaagatgctgaagtggctgcgaaggtgcagttgctatacggcggcagcgtgaaggcggccaatgcgg       <  3:310103‑M2/149‑111 (MQ=255)                                                                                                                                             ccatcggtacgggccttacggccacgccacagcaggcccaggatgtgcacgccgccatccgcggccagttggcggcagaagatgctgaagtggctgcgaaggtgcagttgctatacggcggcagcgtgaaggcggccaatgcggccgaa  <  7:44461‑M1/149‑148 (MQ=255)                                                                                                                                             ccTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCtt                                                                        <  6:337161/79‑1 (MQ=255)                                                                                                                                             ccTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCtt                                                                        >  5:337161/1‑79 (MQ=255)                                                                                                                                              |                                                                                                                                                    CCCATCGATATCCGGCATGCCGAACAGTTCGGCCGCATTGGCCGCCTTCACGCTGCCGCCGTATAGCAACTGCACCTTCGCAGCCACTTCAGCATCTTCTGCCGCCAACTGGCCGCGGATGGCGGCGTGCACATCCTGGGCCTGCTGTGGCGTGGCCGTAAGGCCCGTACCGATGGCCCATACAGGCTCATAGGCAATTACTGCATCGGCAAAAGCCTTAACACCGAATGCTTCGATGATACTGCTTAGTTGACGCCCGACAACTTCGAGCGTCTTGCCAGCCTCGCGC  >  NC_002947/5361673‑5361961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.