New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5502917	67 (1.130)	4 (0.070)	4/236	NT	6.0%	coding (365/432 nt)	PP_4837	hypothetical protein
	?	NC_002947	= 5502938	64 (1.170)					coding (386/432 nt)	PP_4837	hypothetical protein

CACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5502760‑5502917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccagggAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCCCACAT  <  NC_002947/5502938‑5502793                                                                                                                                                                                                                                                                                                                  CACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCACCATCGCCCCCACCACCCACCTGCTTGCGCCAAC                                                                                                                                                             >  4:331243/1‑149    GGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCACAGGCCCTCAGCCAGCTAAGAGACGGCAGCATAGCCCCCACCACCCACCTGCTTGCGACAACGaa                                                                                                                                                          >  6:283730/1‑147         CGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGG                                                                                                                                                     <  3:331243/149‑1          GGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGG                                                                                                                                                    <  3:174490/149‑1                         TTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAAC                                                                                                                                                             >  1:104604/1‑125                         TTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAAC                                                                                                                                                             <  2:104604/125‑1                                                                       ACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTG                                                                                                                  >  5:335429/1‑122                                                                       ACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTG                                                                                                                  <  6:335429/122‑1                                                                                      CCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGT                                                                                                                    <  1:115736/105‑1                                                                                      CCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGT                                                                                                                    >  2:115736/1‑105                                                                                                                                                     CGCACCAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTT         <  1:181993/149‑1                                                                                                                                                       CACCAGGGATTACAGCGTGCCGGGCATGGCCCGGGTGCGTTGGCGCAAGCTGTTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGGAGTAACCGCACTTTTCC       <  8:88905/149‑1                                                                                                                                                       CACCAGGGAATACAGCCTGTCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCC       <  8:188478/149‑1                                                                                                                                                          CAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAG                                                                       <  7:232887/82‑1                                                                                                                                                          CAGGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAG                                                                       >  8:232887/1‑82                                                                                                                                                            GGGAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCCCACAT  >  3:11113/1‑149                                                                                                                                                                                                                                                                                                                  CACGGCCACGGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5502760‑5502917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccagggAATACAGCCTGCCGGGCATGGCCCTGGTGCGTTGGCGCAAGCAGGTGGGTGGTGGGGGCGATGCTGCCGGCGCTGAGCGGGCTGAGGGCCTGGGGCAGGGCCGGGCAGTTGAACAACAGGCTGCAGTAACCGCACTTTTCCCACAT  <  NC_002947/5502938‑5502793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.