New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5502917	67 (1.130)	4 (0.070)	4/236	NT	6.0%	coding (365/432 nt)	PP_4837	hypothetical protein
	?	NC_002947	= 5502938	64 (1.170)					coding (386/432 nt)	PP_4837	hypothetical protein

GGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCAC  >  NC_002947/5502769‑5503064                                                                                                                                                     |                                                                                                                                                    ggcggcGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGG                                                                                                                                                     <  3:174490‑M1/149‑1 (MQ=255)   cggcgATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCTGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGc                                                                                                                                                    >  7:217197/1‑148 (MQ=255)           gCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCgg                                                                                                                                           >  7:160049/1‑149 (MQ=255)            ccAGTTTCATCTGATGTTGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCACCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGc                                                                                                                                          <  5:283730/149‑1 (MQ=255)            ccAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTACCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCgg                                                                                                                                           >  1:290158/1‑148 (MQ=255)             cAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAACATCGCCCCAACCACCCACCTGCTTGCGCCAACGCACCAGGGACATGCCCgg                                                                                                                                           >  2:70675/1‑147 (MQ=255)              aGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAg                                                                                                                                        >  4:11113/1‑149 (MQ=255)               gTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAgg                                                                                                                                       <  7:34622/149‑1 (MQ=255)                  gCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCt                                                                                                                                     <  6:363991/148‑1 (MQ=255)                  gCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCt                                                                                                                                     <  4:331651/148‑1 (MQ=255)                     tgtgatgtgGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCTGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTAt                                                                                                                                 <  8:217197/149‑1 (MQ=255)                         aTGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccc                                                                                                                             >  3:11113‑M2/1‑146 (MQ=255)                              ggAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGACAGGCTGTATTccctggtg                                                                                                                        <  8:188478‑M2/149‑9 (MQ=255)                              ggAAAAGTGCGGTTACTCCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCAACAGCTTGCGCCAACGCACCCGGGCCATGCCCGGCACGCTGTAATccctggtg                                                                                                                        <  8:88905‑M2/149‑9 (MQ=255)                                aaaaGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcg                                                                                                                      <  1:181993‑M2/149‑11 (MQ=255)                                     tGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAg                                                                                                                 <  8:160049/149‑1 (MQ=255)                                       cGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGc                                                                                                                <  3:237907/148‑1 (MQ=255)                                            aCTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCgcgc                                                                                                           <  6:88691/148‑1 (MQ=255)                                              tGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGcccc                                                                                                        >  8:199199/1‑149 (MQ=255)                                              tGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGcccc                                                                                                        >  1:76038/1‑149 (MQ=255)                                                cAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGc                                                                                                      >  6:164089/1‑149 (MQ=255)                                                cAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGc                                                                                                      >  1:1231/1‑149 (MQ=255)                                                cAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGACAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGc                                                                                                      <  7:188478/149‑1 (MQ=255)                                                     tgttgtTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCCCCCCCCCCCTGCTTGCGCCAACGCACCAGGGCCCTGCCCGGCAGGCTGTTTTCCCTGGTGCGCGCAGCCGGGCCCGGCcttct                                                                                                 >  3:275303/1‑149 (MQ=255)                                                     tgttgtTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGt                                                                                                                                   >  1:156269/1‑115 (MQ=255)                                                     tgttgtTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGt                                                                                                                                   <  2:156269/115‑1 (MQ=255)                                                      gttgttCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCcttctt                                                                                                >  7:314139/1‑149 (MQ=255)                                                         gttCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCg                                                                                              <  2:290158/148‑1 (MQ=255)                                                          ttCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGAt                                                                                            <  8:314139/149‑1 (MQ=255)                                                             aaCTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCCCCACCCACCTGCTTGCGCCAACGCACCCGGGCCCTGCCCGGCCGGCTGGATTCCCTGGTGCGCGCAGCCGCGCCCCGCCGTCTGCGATGaa                                                                                         >  7:116767/1‑149 (MQ=255)                                                             aaCTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCaa                                                                                         >  3:370344/1‑149 (MQ=255)                                                              aCTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGaatacagcctgccgggcatggccctggtgcgttg                                                                                                                   <  6:335429‑M1/122‑35 (MQ=255)                                                              aCTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGaatacagcctgccgggcatggccctggtgcgttg                                                                                                                   >  5:335429‑M1/1‑88 (MQ=255)                                                              aCTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAAc                                                                                        <  6:106482/149‑1 (MQ=255)                                                                tGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGt                                                                                      >  5:143223/1‑149 (MQ=255)                                                                  cccGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTTTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGAt                                                                                            >  2:168742/1‑141 (MQ=255)                                                                  cccGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGAt                                                                                            <  1:168742/141‑1 (MQ=255)                                                                   ccGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTg                                                                                   <  5:164089/149‑1 (MQ=255)                                                                    cGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTg                                                                                   >  2:251415/1‑148 (MQ=255)                                                                       cccTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGaaa                                                                                >  4:112974/1‑148 (MQ=255)                                                                         cTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCAGCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAaacaa                                                                             >  7:233007/1‑149 (MQ=255)                                                                            ccccAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCAGCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAaacaac                                                                            <  8:233007/147‑1 (MQ=255)                                                                             cccAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGaatacagcctgccgggcatggccctggtgcgt                                                                                                                     >  2:115736‑M1/1‑73 (MQ=255)                                                                             cccAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGaatacagcctgccgggcatggccctggtgcgt                                                                                                                     <  1:115736‑M1/105‑33 (MQ=255)                                                                               cAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACAtttt                                                                       <  4:370344/149‑1 (MQ=255)                                                                               cAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACAtttt                                                                       >  2:57066/1‑149 (MQ=255)                                                                               cAGGCCCTCACCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACAtttt                                                                       <  8:171632/149‑1 (MQ=255)                                                                                 ggCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTgc                                                                     <  2:1231/149‑1 (MQ=255)                                                                                    ccTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGcc                                                                                                     >  5:24155/1‑114 (MQ=255)                                                                                    ccTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGcc                                                                                                     <  6:24155/114‑1 (MQ=255)                                                                                          cccGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGc                                                            >  3:287752/1‑149 (MQ=255)                                                                                              cTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctg                                                                                                                           <  7:232887‑M2/82‑6 (MQ=255)                                                                                              cTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctg                                                                                                                           >  8:232887‑M2/1‑77 (MQ=255)                                                                                                        gcagcaTCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGTGCACGAAGCCAGGAGGCTTcgcg                                              >  4:266613/1‑149 (MQ=255)                                                                                                            caTCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTaa                                          <  4:287752/149‑1 (MQ=255)                                                                                                             aTCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGTAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAAc                                         >  5:330465/1‑149 (MQ=255)                                                                                                                gCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTc                                       <  6:143223/148‑1 (MQ=255)                                                                                                                    ccaccaCCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTcgc                                               >  7:88835/1‑136 (MQ=255)                                                                                                                    ccaccaCCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTcgc                                               <  8:88835/136‑1 (MQ=255)                                                                                                                    ccaccaCCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGAc                                  >  1:115311/1‑149 (MQ=255)                                                                                                                    ccaccaCCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGAc                                  <  1:251415/149‑1 (MQ=255)                                                                                                                        cacccaccTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGa                                   <  6:244167/144‑1 (MQ=255)                                                                                                                        cacccaccTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGa                                   >  5:244167/1‑144 (MQ=255)                                                                                                                              ccTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTg                        <  1:70675/149‑1 (MQ=255)                                                                                                                               cTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAaac                                                                               >  2:104759/1‑93 (MQ=255)                                                                                                                               cTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAaac                                                                               <  1:104759/93‑1 (MQ=255)                                                                                                                                   ttGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGcctcctg                                                      >  6:360122/1‑109 (MQ=255)                                                                                                                                   ttGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGcctcctg                                                      <  5:360122/114‑6 (MQ=255)                                                                                                                                     gcgcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCACGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCAt                 >  7:138024/1‑149 (MQ=255)                                                                                                                                      cgcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCACGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCAt                 <  8:138024/148‑1 (MQ=255)                                                                                                                                       gcCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGaa                     >  5:169520/1‑143 (MQ=255)                                                                                                                                        ccAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTAt              <  8:116767/149‑1 (MQ=255)                                                                                                                                         cAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagt                                        >  5:335429‑M2/1‑34 (MQ=255)                                                                                                                                         cAACGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagt                                        <  6:335429‑M2/122‑89 (MQ=255)                                                                                                                                         cAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTc                                                 >  8:358969/1‑113 (MQ=255)                                                                                                                                         cAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTc                                                 <  7:358969/113‑1 (MQ=255)                                                                                                                                          aaCGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTc                                       >  5:40722/1‑122 (MQ=255)                                                                                                                                          aaCGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTc                                       <  6:40722/122‑1 (MQ=255)                                                                                                                                          aaCGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGt            >  6:358286/1‑149 (MQ=255)                                                                                                                                          aaCGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGt            >  5:161701/1‑149 (MQ=255)                                                                                                                                           aCGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggg                                                       >  2:115736‑M2/1‑32 (MQ=255)                                                                                                                                           aCGCACCAGGGCCATGCCCGGCAGGCTGTATTccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggg                                                       <  1:115736‑M2/105‑74 (MQ=255)                                                                                                                                            cGCACCAGGGaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaacaggctgcagtaaccgcactttt          <  1:181993‑M1/149‑140 (MQ=255)                                                                                                                                            cGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTcc          >  4:348298/1‑149 (MQ=255)                                                                                                                                              cACCAGGGattacagcgtgccgggcatggcccgggtgcgttggcgcaagctgttgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaacaggctggagtaaccgcacttttcc        <  8:88905‑M1/149‑142 (MQ=255)                                                                                                                                              cACCAGGGaatacagcctgtcgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaacaggctgcagtaaccgcacttttcc        <  8:188478‑M1/149‑142 (MQ=255)                                                                                                                                                 cAGGGaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgag                                                                        >  8:232887‑M1/1‑5 (MQ=255)                                                                                                                                                 cAGGGaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgag                                                                        <  7:232887‑M1/82‑78 (MQ=255)                                                                                                                                                 cAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTg     >  1:182269/1‑149 (MQ=255)                                                                                                                                                  aGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGc    <  2:182269/149‑1 (MQ=255)                                                                                                                                                   gggaatacagcctgccgggcatggccctggtgcgttggcgcaagcaggtgggtggtgggggcgatgctgccggcgctgagcgggctgagggcctggggcagggccgggcagttgaacaacaggctgcagtaaccgcacttttcccacat   >  3:11113‑M1/1‑3 (MQ=255)                                                                                                                                                    ggCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCAc  >  5:303055/1‑149 (MQ=255)                                                                                                                                                    ggCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCAc  <  7:199199/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGCGGCGATGGCCAGTTGCATGTGATGTGGGAAAAGTGCGGTTACTGCAGCCTGTTGTTCAACTGCCCGGCCCTGCCCCAGGCCCTCAGCCCGCTCAGCGCCGGCAGCATCGCCCCCACCACCCACCTGCTTGCGCCAACGCACCAGGGCCATGCCCGGCAGGCTGTATTCCCTGGTGCGCGCAGCCGCGCCCCGCCTTCTTCGATCAACGTCTGAAACAACATTTTGCGCACGAAGCCAGGAGGCTTCGCGCTAACTCATGACTGATCGACTGGAATCATTATGTCCGGCTGCAC  >  NC_002947/5502769‑5503064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.