| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5632333 = | 62 (1.050) | 4 (0.070) | 4/244 | NT | 6.7% | coding (1863/3954 nt) | putA | proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase |
| ? | NC_002947 | 5632376 = | 52 (0.920) | coding (1906/3954 nt) | putA | proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase | |||||
CCGACGACGTCGCGGTGGTCAGCCGGGTTCAGCACCGGTGCGGCAGCGCTCTCGCTGGCGGCGCAGGCCAGCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5632485‑5632333‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatgCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGCCTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAA > NC_002947/5632376‑5632521 CCGACGACGTCGCGGTGGTCAGCCGGGTTCAGCACCGGTGCGGCAGCGCTCTCGCTGGCGGCGCAGGCCAGCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGC > 5:54666/1‑149CCGACGACGTCGCGGTGGTCAGCCGGGTTCAGCACCGGTGCGGCAGCGCTCTCGCTGGCGGCGCAGGCCAGCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGC < 6:113875/149‑1 CAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGCTGGCCACCGCTCACAACGCCTGGAAGGCTGCCCCGCTGCTGGCCTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACG > 6:112990/1‑149 AGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGCCTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCA > 3:343455/1‑140 AGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGCCTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCA < 4:343455/140‑1 GACAGCGACGCCAGGCGGTG‑TCCTGCGCCATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGCCTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTG > 5:1190/1‑149 CATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGCCTGCGCCGCCAGCGAGAGCGCTGCAGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGAC > 8:29168/1‑148 ATGCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGCCTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAA < 8:52670/149‑1 CCGACGACGTCGCGGTGGTCAGCCGGGTTCAGCACCGGTGCGGCAGCGCTCTCGCTGGCGGCGCAGGCCAGCAGCGGGGCAGCCTTCCAGTCGTTGTGAGCGGTGGCCAGCATGGCGCAGGACAGCGACGCCAGGCGGTGTTCATTGGCCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5632485‑5632333‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatgCTGGCCACCGCTCACAACGACTGGAAGGCTGCCCCGCTGCTGGCCTGCGCCGCCAGCGAGAGCGCTGCCGCACCGGTGCTGAACCCGGCTGACCACCGCGACGTCGTCGGCCATGTGCAGGAGGCCACCGTTGCCGACGTTGACAA > NC_002947/5632376‑5632521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |