New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5709382	72 (1.220)	4 (0.070)	4/244	NT	6.3%	coding (3400/4761 nt)	PP_5009	hypothetical protein
	?	NC_002947	= 5709458	51 (0.910)					coding (3476/4761 nt)	PP_5009	hypothetical protein

GGTGCAGCCATCGAAAACGACATGCTGCTGTGCCGCCGCTTGCTGGAGCAGGTCGACCACCAGGCGCTGAGCGCACAGTCCATCGGGCTGCCCCGCGTTCCAGAGACTGCCGAGCAGATACAGCAATACCTCGATTATCGCGAACGGGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5709232‑5709382 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtccTGCAGTGTTTCCGCCAGGATCCGATCCAGCCGCTGACTGACGACAAGCAGGCGGCGGCTGGCCTGGCTGGAATCGCGGACCCGTTCGCGATAATCGAGGTATTGCTGTATCTGCTCGGCAGTCTCTGGAACGCGGGGCAGCCCGAT  <  NC_002947/5709458‑5709313                                                                                                                                                                                                                                                                                                           GGTGCAGCCATCGAAAACGACATGCTGCTGTGCCGCCGCTTGCTGGAGCAGGTCGACCACCAGGCGCTGAGCGCACAGTCCATCGGGCTGCCCCGCGTTCCAGAGACTGCCGAGCAGATACAGCAATACCTCGATTATCGCGAACGGGT                                                                                                                                                      <  5:5179/149‑1            CGAAAACGACATGCTGCTGTGCCGCCGCTTGCTGGAGCAGGTCGACCACCAGGCGCTGAGCGCACAGTCCATCGGGCTGCCCCGCGTTCCAGAGACTGCCGAGCAGATACAGCAATACCTCGATTATCGCGAACGGGTCCTGCAGTGTT                                                                                                                                           >  3:86706/1‑149                                                                             AGTCCATCGGGCTGCCCCGCGTTCCAGAGACTGCCGAGCAGATACAGCAATACCTCGATTATCGCGAACGGGTCCTGCAGTGTTTCCGCCAGGATCCGATCCAGCCGCTGACTGACGACAAGCAGGCGGCGGCTGGCCTGGCTGGAATC                                                                          >  6:9543/1‑149                                                                                   TCGGGCTGCCCCGCGTTCCAGAGACTGCCGAGCAGATACAGCAATACCTCGATTATCGCGAACGGGTCCTGCAGTGTTTCCGCCAGGATCCGATCCAGCCGCTGACTGACGACAAGCAGGCGGCGGCTGGCCTGGCTGGAATCGCGGAC                                                                    <  5:9543/149‑1                                                                                           CCCCGCGTTCCAGAGACTGCCGAGCAGATACAGCAATACCTCGATTATCGCGAACGGGTCCTGCAGTGTTTCCGCCAGGATCCGATCCAGCCGCTGACTGACGACAAGCAGGCGGCGGCTGGCCTGGCTGGAATCGCGGACCCGTTC                                                              <  4:86706/147‑1                                                                                                                                                  GGGTCCTGCAGTGTTTCCGCCAGGATCCGATCCAGCCGCTGACTGACGACAAGCAGGCGGCGGCTGGCCTGGCTGGAATCGCGGACCCGTTCGCGATAATCGAGGTATTGCTGTATCTGCTCGGCAGTCTCTGGAACGCGGGGCAGCC      <  5:319766/148‑1                                                                                                                                                  GGGTCCTGCAGTGTTTCCGCCAGGATCCGATCCAGCCGCTGACTGACGACAAGCAGGCGGCGGCTGGCCTGGCTGGAATCGCGGACCCGTTCGCGATAATCGAGGTATTGCTGTATCTGCTCGGCAGTCTCTGGAACGCGGGGCAGCC      <  6:293876/148‑1                                                                                                                                                     TCCTGCAGTGTTTCCGCCAGGATCCGATCCAGCCGCTGACTGACGACAAGCAGGCGGCGGCTGGCCTGGCTGGAATCGCGGACCCGTTCGCGATAATCGAGGTATTGCTGTATCTGCTCGGCAGTCTCTGGAACGCGGGGCAGCCCGAT  <  7:279189/149‑1                                                                                                                                                                                                                                                                                                           GGTGCAGCCATCGAAAACGACATGCTGCTGTGCCGCCGCTTGCTGGAGCAGGTCGACCACCAGGCGCTGAGCGCACAGTCCATCGGGCTGCCCCGCGTTCCAGAGACTGCCGAGCAGATACAGCAATACCTCGATTATCGCGAACGGGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5709232‑5709382 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtccTGCAGTGTTTCCGCCAGGATCCGATCCAGCCGCTGACTGACGACAAGCAGGCGGCGGCTGGCCTGGCTGGAATCGCGGACCCGTTCGCGATAATCGAGGTATTGCTGTATCTGCTCGGCAGTCTCTGGAACGCGGGGCAGCCCGAT  <  NC_002947/5709458‑5709313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.