| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5875315 | 74 (1.250) | 3 (0.050) | 3/250 | NT | 4.2% | coding (856/1515 nt) | ilvA‑II | threonine deaminase |
| ? | NC_002947 | = 5875360 | 64 (1.110) | coding (811/1515 nt) | ilvA‑II | threonine deaminase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGATGGTCACGGCGATGATCGCCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5875165‑5875315‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATCAAGA < NC_002947/5875360‑5875309 GGATGGTCACGGCGATGATCGCCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATAGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTG < 2:334318/149‑1 ATGGTCACGGCGATGATCGCCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGAT > 6:72107/1‑149 CCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGA > 1:297485/1‑129 CCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGA < 2:297485/129‑1 CCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGA > 3:179932/1‑129 CCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGA < 4:179932/129‑1 GCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGATACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCG > 8:286562/1‑149 CGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGATACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGC < 7:189629/149‑1 CCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGATACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATCAAGA < 7:286562/149‑1 GGATGGTCACGGCGATGATCGCCTCGCGCTTTTCACCCAGCTCGGCACGTTCGGCCACATGGCGCAGGCGATCGAAATTGACGTTGGCACCGGAGTCGATGGCCACCAAGGTCTGGCCGCTGACGCCGTATAGCTCGACGTACTTCTTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5875165‑5875315‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatACCCGCTCGATCACCGAGCCTGCTGGCGCGCTGGGTGTGGCGGGCATCAAGA < NC_002947/5875360‑5875309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |