New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5968327 =	69 (1.170)	4 (0.070)	4/244	NT	6.7%	coding (245/360 nt)	PP_5723	hypothetical protein
	?	NC_002947	5968377 =	45 (0.800)					coding (195/360 nt)	PP_5723	hypothetical protein

CCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGGCCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTGCCCCGCTGCTGCGCACCGAAATTGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5968478‑5968327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgcaACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATC  >  NC_002947/5968377‑5968498                                                                                                                                                                                                                                                                                    CCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGGCCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTCGCACATTTTTCGCGCAGCTTGCCCCGCTGCTGCGCACCGAAATTGT                                                                                                                               >  2:301011/1‑149                                                                                                  GCTGTTGCACATTTTTCGCGCAGCTTGCCCCGCTGCTGCGCACCGAAATTGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAA                                                   >  3:314736/1‑128                                                                                                  GCTGTTGCACATTTTTCGCGCAGCTTGCCCCGCTGCTGCGCACCGAAATTGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAA                                                   <  4:314736/128‑1                                                                                                    TGTTGCACATTTTTCGCGCAGCTTGCCCCGCTGCTGCGCACCGAAATTGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATAT                            >  5:96587/1‑149                                                                                                                              CCCGCTGCTGCGCACCGAAATTGTGCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATC  <  6:96587/149‑1                                                                                                                                                                                                                                                                                    CCGGCAATATCAGCATCAAGGCACAAATCTTGGGGGGCGCTTCGCACCCCAATCGCGACGCAAGGCCGCTCCCACAAAGATCGCGTGCAGTTTTCAAGCTGTTGCACATTTTTCGCGCAGCTTGCCCCGCTGCTGCGCACCGAAATTGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5968478‑5968327 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgcaACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATC  >  NC_002947/5968377‑5968498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.