New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5968327 =	69 (1.170)	4 (0.070)	4/244	NT	6.7%	coding (245/360 nt)	PP_5723	hypothetical protein
	?	NC_002947	5968377 =	45 (0.800)					coding (195/360 nt)	PP_5723	hypothetical protein

GGTCTTTGCAGAAACCTTGCCAGTTCCGACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGAC  >  NC_002947/5968231‑5968503                                                                                                                                                    |                                                                                                                               atatcagcatcaaggcacaaatcttggggggcgcttcgcaccccaatcgcgacgcaaggccgctcccacaaagatcgcgtgcagttttcaagctgtTGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACa                                                                                                                              >  5:96587‑M1/97‑149 (MQ=255)       tGCAGAAACCTTGCCAGTTCCGACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCtt                                                                                                                          <  7:123143/147‑1 (MQ=255)        gCAGAAACCTTGCCAGTTCCGACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGa                                                                                                                        >  5:279215/1‑148 (MQ=255)             aaCCTTGCCAGTTCCGACAAAGCTCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACt                                                                                                                   <  6:279215/148‑1 (MQ=255)                cTTGCCAGTTCCGACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCAc                                                                                                               >  6:234089/1‑149 (MQ=255)                 ttGCCAGTTCCGACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCAcg                                                                                                              >  5:144528/1‑149 (MQ=255)                      aGTTCCGACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTA‑CAACAGCTTGAAAACTGCAcg                                                                                                              >  8:334755/1‑144 (MQ=255)                      aGTTCCGACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTA‑CAACAGCTTGAAAACTGCAcg                                                                                                              <  7:334755/144‑1 (MQ=255)                        ttggggggcgcttcgcaccccaatcgcgacgcaaggccgctcccacaaagatcgcgtgcagttttcaagctgtTGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGc                                                                                                                            <  4:314736‑M1/55‑1 (MQ=255)                        ttggggggcgcttcgcaccccaatcgcgacgcaaggccgctcccacaaagatcgcgtgcagttttcaagctgtTGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGc                                                                                                                            >  3:314736‑M1/74‑128 (MQ=255)                            gACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTtgtg                                                                                                   <  6:262757/149‑1 (MQ=255)                            gACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTtgt                                                                                                    >  1:111344/1‑148 (MQ=255)                            gACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTtgt                                                                                                    <  2:111344/148‑1 (MQ=255)                             aCAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTgg                                                                                                  <  3:302010/149‑1 (MQ=255)                             aCAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTgg                                                                                                  <  1:263019/149‑1 (MQ=255)                               aaaGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGa                                                                                                <  5:377607/149‑1 (MQ=255)                                 aGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGc                                                                                              <  6:144528/149‑1 (MQ=255)                                       gAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCtt                                                                                        >  8:290855/1‑149 (MQ=255)                                        aaaaaCAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTg                                                                                       <  3:18363/149‑1 (MQ=255)                                          aaaCAGCGCGTTATGTCATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTGCCAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGc                                                                                      <  1:270007/149‑1 (MQ=255)                                              aGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTcgc                                                                                 >  4:201098/1‑149 (MQ=255)                                                      aTGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGAGCTTTGTGGGAGCGGCCTTGCGTCGCGATTggg                                                                          <  5:323291/148‑1 (MQ=255)                                                          gATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CGACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGc                                                                      >  1:301011/1‑148 (MQ=255)                                                          gATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGc                                                                      >  4:60278/1‑148 (MQ=255)                                                                 tCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGcc                                                              >  6:390610/1‑149 (MQ=255)                                                                     gATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGCTTTGGGTGGGGAGCGccccc                                                           >  3:258174/1‑148 (MQ=255)                                                                      aTTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGcccccc                                                          >  7:174089/1‑148 (MQ=255)                                                                       ttGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCaa                                                        <  1:220511/149‑1 (MQ=255)                                                                          gCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTgg                                                                                                  >  1:95559/1‑104 (MQ=255)                                                                          gCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTgg                                                                                                  <  2:95559/104‑1 (MQ=255)                                                                          gCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGGGCGCTTCGCACCCCaatcg                                                     <  3:64190/149‑4 (MQ=255)                                                                            cAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTggg                                                                          >  4:74134/1‑126 (MQ=255)                                                                            cAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTggg                                                                          <  3:74134/126‑1 (MQ=255)                                                                              gTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTCGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTtgt                                                 <  8:197920/149‑1 (MQ=255)                                                                               tCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTtgtg                                                <  5:327916/149‑1 (MQ=255)                                                                                   cAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCtt                                            <  3:201098/149‑1 (MQ=255)                                                                                   cAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGGGccgt                                            >  6:373773/1‑147 (MQ=255)                                                                                         gggAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAg                                                                  <  4:293878/121‑1 (MQ=255)                                                                                         gggAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAg                                                                  >  3:293878/1‑121 (MQ=255)                                                                                         gggAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGAt                                                     >  4:251473/1‑134 (MQ=255)                                                                                         gggAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGAt                                                     <  3:251473/134‑1 (MQ=255)                                                                                          ggAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTg                                     <  7:290855/149‑1 (MQ=255)                                                                                             gctgttgcacatttttcgcgcagcttgccccgctgctgcgcaccgaaattgtgcaACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCaa                                                        >  3:314736‑M2/56‑128 (MQ=255)                                                                                             gctgttgcacatttttcgcgcagcttgccccgctgctgcgcaccgaaattgtgcaACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCaa                                                        <  4:314736‑M2/73‑1 (MQ=255)                                                                                               tgttgcacatttttcgcgcagcttgccccgctgctgcgcaccgaaattgtgcaACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGatat                                 >  5:96587‑M2/54‑149 (MQ=255)                                                                                                    ACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CGACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCgg                           >  2:301011‑M1/1‑149 (MQ=255)                                                                                                            ggTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCt                    <  5:234089/148‑1 (MQ=255)                                                                                                             gTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCtgt                  <  3:60278/149‑1 (MQ=255)                                                                                                                cgcAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCa               <  8:174089/149‑1 (MQ=255)                                                                                                                  cagcagCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGc             <  6:295477/149‑1 (MQ=255)                                                                                                                         cccgctgctgcgcaccgaaattgtgcaACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATc       <  6:96587‑M2/122‑1 (MQ=255)                                                                                                                                     gcgAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGAc  >  6:286547/1‑141 (MQ=255)                                                                                                                                     gcgAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGAc  <  5:286547/141‑1 (MQ=255)                                                                                                                                                    |                                                                                                                               GGTCTTTGCAGAAACCTTGCCAGTTCCGACAAAGCGCCGAAAAACAGCGCGTTATGTGATTTGCTCGGGATTGGCCAGTCGCCAGCACGGGAAACATGCACAATTTCGGTGCGCAGCAGCGGGGCAAGCTGCGCGAAAAATGTG‑CAACAGCTTGAAAACTGCACGCGATCTTTGTGGGAGCGGCCTTGCGTCGCGATTGGGGTGCGAAGCGCCCCCCAAGATTTGTGCCTTGATGCTGATATTGCCGGGGCCGCTGTGCAGCCCAATCGCGAC  >  NC_002947/5968231‑5968503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.