New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5989280	64 (1.080)	3 (0.060)	3/228	NT	5.7%	noncoding (29/87 nt)	PP_mr64	C4 ncRNA
	?	NC_002947	= 5989327	42 (0.800)					noncoding (76/87 nt) coding (38/399 nt)	PP_mr64 PP_5247	C4 ncRNA hypothetical protein

TTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5989120‑5989280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagttgtgcgcgGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAGCTGGC  <  NC_002947/5989327‑5989185                                                                                                                                                                                                                                                                                                                  TTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGG                                                                                                                                                             <  2:238227/149‑1    ACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAG                                                                                                                                                          <  4:299485/149‑1      ACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTT                                                                                                                                                        <  5:106718/149‑1                                              CGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAG                                                                                                                >  7:344655/1‑149                                               GTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGC                                                                                                                                                    >  5:228701/1‑112                                               GTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGC                                                                                                                                                    <  6:228701/112‑1                                                                   CCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCAC                                                                                           <  5:249316/149‑1                                                                    CAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTT                                                                                                                                                        >  7:94733/1‑87                                                                    CAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTT                                                                                                                                                        <  8:94733/87‑1                                                                       CTCTCTAGGCTGACCAGGTCGCGGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACT                                                                                       <  8:344655/149‑1                                                                                                                                                      CAGTTGTGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGA        <  6:155988/149‑1                                                                                                                                                            TGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAGCTGGC  >  3:97131/1‑149                                                                                                                                                            TGCGCGGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAGCTGGC  <  6:192073/149‑1                                                                                                                                                                                                                                                                                                                  TTCACACCAATCCCAAGGAATTATCCTACACACCGTGTCGACGCCCGTCTGATTGTCCGGGGAAAGCCAGCTCTCTAGGCTGACCAGGTCGCTGTCGGTTCAGCGATCGGGTGTGGAAACCCGGATGTGATGAAGGGCTGCCGTTATGGCAGTTGTGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5989120‑5989280 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagttgtgcgcgGGGTGGAAAACCGGTGAGAAGGCAAGCCGGTAGGCCAAACGGCCTCACGCGCACAACTGCCATAACGGCAGCCCTTCATCACATCCGGGTTTCCACACCCGATCGCTGAACCGACAGCGACCTGGTCAGCCTAGAGAGCTGGC  <  NC_002947/5989327‑5989185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.