New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 746961	NA (NA)	13 (0.220)	12/256	NT	23.2%	intergenic (‑88/‑706)	PP_0638/PP_5448	transposase/hypothetical protein
	?	NC_002947	= 2217636	43 (0.730)					coding (539/828 nt)	PP_1958	hypothetical protein

GTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTG  >  NC_002947/746820‑747108                                                                                                                                               |                                                                                                                                                    gTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGa                                                                                                                                              <  7:269552/149‑1 (MQ=34)         gCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCa                                                                                                                                      <  3:270706/149‑1 (MQ=40)               ggtagaggtagaCTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGccacc                                                                                                                                <  2:134541/149‑1 (MQ=255)                   gaggtagaCTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAg                                                                                                                            <  3:191908/149‑1 (MQ=255)                      gtagaCTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCt                                                                                                                          >  7:306564/1‑148 (MQ=255)                      gtagaCTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCt                                                                                                                          >  6:362599/1‑148 (MQ=255)                      gtagaCTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCt                                                                                                                          >  6:351553/1‑148 (MQ=255)                              tttCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGc                                                                                                                   >  8:180074/1‑147 (MQ=255)                              tttCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGc                                                                                                                   <  7:180074/147‑1 (MQ=255)                              tttCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCt                                                                                                                  <  5:351553/148‑1 (MQ=255)                                tCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCg                                                                                                               >  4:172537/1‑149 (MQ=255)                                     tttGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCTAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGtt                                                                                                             >  1:247572/1‑147 (MQ=255)                                     tttGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAAGGTGGGGATGATGGATCCCTTACGCTTAGAACACCCCAGCCACCATAGCTCAATGGCTGCGTTCAg                                                                                                          >  4:272208/1‑149 (MQ=255)                                              ggggCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAAcc                                                                                                 <  2:247572/149‑1 (MQ=255)                                                              ggcaggctCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCggcagggcag                                                                                 <  8:356211/149‑1 (MQ=255)                                                                   gctCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGt                                                                            >  5:309048/1‑149 (MQ=255)                                                                    ctCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTg                                                                           <  8:306564/149‑1 (MQ=255)                                                                     tCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGa                                                                          >  3:244696/1‑149 (MQ=255)                                                                                 aTCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCAc                                                                >  6:333751/1‑148 (MQ=255)                                                                                                tCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGTAGGGCAGCTCGTGatat                                                                       >  6:203990/1‑126 (MQ=255)                                                                                                tCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGatat                                                                       <  5:203990/126‑1 (MQ=255)                                                                                                tCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCa                                                <  5:362599/149‑1 (MQ=255)                                                                                                  gggAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATa                                              <  3:172537/149‑1 (MQ=255)                                                                                                          ggTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAAttt                                      >  3:273542/1‑149 (MQ=255)                                                                                                          ggTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGATCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGATCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAAttt                                      >  3:130652/1‑149 (MQ=255)                                                                                                             ggACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGt                                                                            >  6:277105/1‑108 (MQ=255)                                                                                                             ggACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGt                                                                            <  5:277105/108‑1 (MQ=255)                                                                                                              gACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTATAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCggcagggcag                                                                                 <  8:244855/102‑1 (MQ=255)                                                                                                              gACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCggcagggcag                                                                                 >  7:244855/1‑102 (MQ=255)                                                                                                                           tgGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGggcgg                      <  6:309048/148‑1 (MQ=255)                                                                                                                             gggATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCac                   >  4:247039/1‑149 (MQ=255)                                                                                                                             gggATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCa                    <  7:262381/148‑1 (MQ=255)                                                                                                                               gatgatGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCacc                  >  7:176577/1‑148 (MQ=255)                                                                                                                                  gatgGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTAACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCaccgacc              >  3:52603/1‑149 (MQ=255)                                                                                                                                          ccTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTgg       <  3:247039/148‑1 (MQ=255)                                                                                                                                           cTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTg     >  2:239130/1‑149 (MQ=255)                                                                                                                                              aCGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGc    <  4:244696/147‑1 (MQ=255)                                                                                                                                              aCGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTg  >  5:243761/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                    GTCCACGGGCTTGGGGTAGAGGTAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCC‑AGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGCTTAGAAAACCCCAGCCACCATAGCTCAATGGCTGCGTTCAGCCTCCAACCCTCAGCGGCAGGGCAGCTCGTGATATCGCTCACGATTGGCTGAGATTCATAGGAAATTTCGGGTAAGAGGGGCGGCACCGACCGTTCTGGTGCTG  >  NC_002947/746820‑747108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.