New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1126593 =	34 (0.580)	7 (0.120)	7/248	NT	20.0%	intergenic (‑47/+102)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	1126650 =	23 (0.400)					intergenic (‑104/+45)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase

AGCCCTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACA  >  NC_002947/1126446‑1126735                                                                                                                                                    |                                                                                                                                                  gaaggcaagtactggccgccggtcggccgggtcgacaacgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGc                                                                                                                                                  <  1:19826‑M1/2‑1 (MQ=255)   cagttCGGCAATCCGCGCAGCGGAGCTCAGCGGGCCGACCATGTGGTAGCTGGCGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCgg                                                                                                                                                <  4:44851/146‑1 (MQ=255)   aggcaagtactggccgccggtcggccgggtcgacaacgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCgg                                                                                                                                                >  6:298082‑M1/146‑149 (MQ=255)    ggcaagtactggccgccggtcggccgggtcgacaacgtgttcggcgaccgctacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCgg                                                                                                                                                >  8:137724‑M1/145‑148 (MQ=255)    ggcaagtactggccgccggtcggccgggtcgacaacgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCggg                                                                                                                                               >  8:308162‑M1/145‑149 (MQ=255)    ggcaagtactggccgccggtcggccgggtcgacaacgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCggg                                                                                                                                               >  5:57917‑M1/145‑149 (MQ=255)     cTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGt                                                                                                                                              >  3:306778/1‑149 (MQ=255)      ttCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGtt                                                                                                                                             >  6:335709/1‑149 (MQ=255)        agtactggccgccggtcggccgggtcgacaacgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCGGGTTTa                                                                                                                                           >  7:117784‑M1/141‑149 (MQ=255)           cAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAccc                                                                                                                                        <  5:335709/149‑1 (MQ=255)            ctggccgccggtcggccgggtcgacaacgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCGGGTTTACCcg                                                                                                                                       <  2:210637‑M1/13‑1 (MQ=255)              aCCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCcgc                                                                                                                                      >  8:201757/1‑148 (MQ=255)               ccGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTAAACCcgcgc                                                                                                                                    <  4:204310/149‑2 (MQ=255)                 gcgcAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAACCGCGAAt                                                                                                                                  >  2:19826/1‑149 (MQ=255)                 gcgcAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGACGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTCCACCTCCTGCCAGGTACTTGGGAGGACATTGAGCACTGTAGGCGCGGGTTTACCCGCGAAt                                                                                                                                  >  5:183277/1‑149 (MQ=38)                  gccggtcggccgggtcgacaacgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccaccgggcttgggtggcgggcgctgtgtaggagccg                                                                                                                                                <  8:160126‑M1/4‑3 (MQ=255)                      gcggcgCGCATCGGGCCTACCGTGTGGGAGATGGAGGGGCAGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGTACATTGATCCGTGTAGGCGCGGGTTTAGCCGCGAATGCGGa                                                                                                                             <  6:183277/149‑1 (MQ=38)                       cggcgCGCATCGGGCCTTCCGTCTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCAGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAg                                                                                                                            <  5:373117/149‑1 (MQ=255)                         gcgcgcATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGt                                                                                                                          <  8:178328/149‑1 (MQ=255)                             gcATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAg                                                                                                                      <  2:307887/149‑1 (MQ=255)                                    gCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTCCCGCGAATGGGGAGGTATAGGCACCAt                                                                                                               >  4:141137/1‑149 (MQ=255)                                       gACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGc                                                                                                            <  4:77222/149‑1 (MQ=255)                                       cgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCGGGTTTAc                                                                                                                                          >  2:204645‑M1/110‑119 (MQ=255)                                       cgtgttcggcgaccgcaacctggtgtgcgcctgcccgtcgatcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCGGGTTTAc                                                                                                                                          <  1:204645‑M1/10‑1 (MQ=255)                                           gtgtGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTTACATGTGGACCTCCTTCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTc                                                                                                        <  7:167213/149‑1 (MQ=255)                                           gtgtGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTc                                                                                                        <  6:309406/149‑1 (MQ=255)                                             gtgGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGAGATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTcgc                                                                                                      >  5:77848/1‑149 (MQ=255)                                               gggAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCgg                                                                                                    <  7:148667/149‑1 (MQ=255)                                                ggAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGCCGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCgg                                                                                                    <  5:326819/148‑1 (MQ=255)                                                ggAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCgg                                                                                                    <  6:77848/148‑1 (MQ=255)                                                ggAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCgg                                                                                                    >  6:326819/1‑148 (MQ=255)                                                         ggggCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGa                                                                                                                                    >  1:128453/1‑107 (MQ=255)                                                         ggggCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGa                                                                                                                                    <  2:128453/107‑1 (MQ=255)                                                           ggCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAA‑cccgctc                                                                                     <  4:306778/149‑6 (MQ=255)                                                                     gatCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGCAAGCGGAGGGTAAGGCACCAACCCCATCGCCGG‑TGAAC‑CCGCACCCACACagcc                                                                            >  6:150081/1‑147 (MQ=255)                                                                           gAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGccc                                                                         <  3:141137/146‑1 (MQ=255)                                                                                tcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCgg                                                                                                    >  6:362944‑M1/69‑116 (MQ=255)                                                                                tcgagagctatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCgg                                                                                                    <  5:362944‑M1/48‑1 (MQ=255)                                                                                 gTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTTACCGCGGATGCGGGGGGTTAGGCCCCCACGCCATCGCGGGTT‑AAC‑CCGCGCCGACACAGAGccccccccccca                                                                >  6:94222/1‑147 (MQ=255)                                                                                    gAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCa                                                                     >  5:106106/1‑141 (MQ=255)                                                                                    gAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCa                                                                     <  6:106106/141‑1 (MQ=255)                                                                                        tatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTc                                                                                                        >  2:178131‑M1/61‑104 (MQ=255)                                                                                        tatcaggacgcctgatagccctccccgccacctggcttgggtggcgggctctgtgtaggaGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTc                                                                                                        <  1:178131‑M1/44‑1 (MQ=255)                                                                                                tGACCTGGGGCCCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGa                                                 <  5:150081/149‑1 (MQ=38)                                                                                                                  ccAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGTAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCt                                <  4:366172/148‑1 (MQ=255)                                                                                                                                  aCATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGAc               <  5:94222/149‑1 (MQ=255)                                                                                                                                      tGAGCCCCGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCtcga                    <  5:142485/140‑1 (MQ=255)                                                                                                                                       gAGCCCTGTAGGCGCGGGTTTAACCGCGAATGCGGAGGGATAGCCACCCACGCATTAGCGGG‑TAAAA‑CCGCAGCAACACAGAGCCCCCCACCCCACCCAGGTGGCGGGGGGGGCTATAAGGCGGGCGGATTGCGCTCGCACGACggg            >  2:88910/1‑147 (MQ=255)                                                                                                                                             tGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAggg                                              <  5:116218/107‑1 (MQ=255)                                                                                                                                               tAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTGGCGGG‑T‑AAACCCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGcaca  >  1:127478/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  AGCCCTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGGAGGTATAGCCACCATCGCATTCGCGGG‑T‑AAA‑CCGCTCCTACACAGAGCCCGCCACCCAAGCCAGGTGGCGGGGAGGGCTATCAGGCGTCCTGATAGCTCTCGATCGACGGGCAGGCGCACA  >  NC_002947/1126446‑1126735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.