New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1243942 =	54 (0.910)	3 (0.050)	3/246	NT	5.5%	coding (543/675 nt)	rnt	ribonuclease T
	?	NC_002947	1243990 =	52 (0.920)					coding (495/675 nt)	rnt	ribonuclease T

GCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAGGTC  >  NC_002947/1243798‑1244076                                                                                                                                                  |                                                                                                                                       ggcactcaaggccaacggctgcaagcgggcgattctggtcggccacaacagcagcttcgacctgggtttcctcaatgcagcagtggcgcgcaatgacctgaagcgcaacccgttccacccgttctccagcttcgacaccgccaccCTgg                                                                                                                                     <  5:335094‑M1/4‑1 (MQ=255)    tttAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAgg                                                                                                                                 >  1:53799/1‑149 (MQ=255)      tAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGcc                                                                                                                               >  3:56695/1‑149 (MQ=255)          aGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCAGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCcgcg                                                                                                                           >  7:178975/1‑149 (MQ=255)             tCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGATC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCACGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGcc                                                                                                                         >  5:41273/1‑148 (MQ=255)                 tCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCAc                                                                                                                    >  5:159998/1‑149 (MQ=255)                 tCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCAc                                                                                                                    >  8:79300/1‑149 (MQ=255)                 tCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGGGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCAc                                                                                                                    >  7:201750/1‑149 (MQ=255)                      gAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCt                                                                                                               >  2:311006/1‑149 (MQ=255)                       aaaTCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTg                                                                                                              <  2:53799/149‑1 (MQ=255)                          tCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTAGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGc                                                                                                            >  1:112272/1‑148 (MQ=255)                            gcgcCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCa                                                                                                          >  2:183439/1‑148 (MQ=255)                              gcCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTCAAGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATa                                                                                                        >  1:284726/1‑149 (MQ=255)                                      cccATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCcgc                                                                                                                            >  4:328109/1‑120 (MQ=255)                                      cccATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCcgc                                                                                                                            <  3:328109/120‑1 (MQ=255)                                         aTTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGc                                                                                            >  4:42602/1‑149 (MQ=255)                                         aTTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGc                                                                                            >  5:149601/1‑149 (MQ=255)                                          tttctttcCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGc                                                                                            >  6:69053/1‑148 (MQ=255)                                          tttctttcCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGc                                                                                            >  1:314004/1‑148 (MQ=255)                                          tttctttcCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGc                                                                                            >  5:101994/1‑148 (MQ=255)                                             ctttcCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAg                                                                                         <  1:311006/148‑1 (MQ=255)                                              caacagcagcttcgacctgggtttcctcaatgcagcagtggcgcgcaatgacctgaagcgcaacccgttccacccgttctccagcttcgacaccgccaccCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAgg                                                                                        >  6:335094‑M1/101‑149 (MQ=255)                                                  cAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTgg                                                                                    <  4:56695/148‑1 (MQ=255)                                                     cGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGgt                                                                                <  1:183439/149‑1 (MQ=255)                                                       gTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGgtgt                                                                              <  6:159998/149‑1 (MQ=255)                                                       gTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGgtgt                                                                              <  1:199738/149‑1 (MQ=255)                                                                 ccGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTgg                                                                     <  5:69053/148‑1 (MQ=255)                                                                 ccGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGga                                                                    <  3:115779/149‑1 (MQ=255)                                                                   gCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGgag                                                                   >  4:226730/1‑148 (MQ=255)                                                                   gCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGgag                                                                   >  6:70278/1‑148 (MQ=255)                                                                      gAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACg                                                               <  6:228911/149‑1 (MQ=255)                                                                         cAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGt                                                            <  8:201750/149‑1 (MQ=255)                                                                          aGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTg                                                           <  2:314004/149‑1 (MQ=255)                                                                              cagcagtggcgcgcaatgacctgaagcgcaacccgttccacccgttctccagcttcgacaccgccaccCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCa                                                                                          >  4:352905‑M1/69‑115 (MQ=255)                                                                              cagcagtggcgcgcaatgacctgaagcgcaacccgttccacccgttctccagcttcgacaccgccaccCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCa                                                                                          <  3:352905‑M1/47‑1 (MQ=255)                                                                              c‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAAc                                                       >  8:251361/1‑149 (MQ=255)                                                                                   ggTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCcgcg                                                                                                                           <  4:281600/77‑1 (MQ=255)                                                                                   ggTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCcgcg                                                                                                                           >  3:281600/1‑77 (MQ=255)                                                                                         ctcGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTgcgc                                              <  1:285968/148‑1 (MQ=255)                                                                                            ggTGTCATAACGTGCCGAGTGCGCCTCACGCACGTCGAATTCGATGTCGGCGCTCTGGCATTCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGCACGGGGGGACCGCGTTGCGCta                                            >  6:264215/1‑146 (MQ=255)                                                                                                  aTAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGGGGAACGGGTTGCGCTTCAGGTCa                                     <  6:149601/148‑1 (MQ=255)                                                                                                       gTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTgcgc                               <  3:42602/149‑1 (MQ=255)                                                                                                         gCCGAGAGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCGCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGTTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTgcgcgc                             <  6:41273/149‑1 (MQ=255)                                                                                                             aGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCAct                         >  1:147201/1‑149 (MQ=255)                                                                                                                    cTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCAt                  >  8:132530/1‑149 (MQ=255)                                                                                                                        cGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAg              <  7:251361/149‑1 (MQ=255)                                                                                                                        cGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAg              <  8:178975/149‑1 (MQ=255)                                                                                                                                gAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTGGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCa      <  5:264215/149‑1 (MQ=255)                                                                                                                                gAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGNGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAAccc       <  5:70278/148‑1 (MQ=255)                                                                                                                                gAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAAccc       <  3:226730/148‑1 (MQ=255)                                                                                                                                  aGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTgcgc                                              <  5:36064/107‑1 (MQ=255)                                                                                                                                  aGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAgg    >  5:79887/1‑149 (MQ=255)                                                                                                                                  aGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAgg    <  7:132530/149‑1 (MQ=255)                                                                                                                                  aGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGCTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTgcgc                                              >  6:36064/1‑107 (MQ=255)                                                                                                                                   gTCGATGTCGGCTCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAGGt   <  6:101994/149‑1 (MQ=255)                                                                                                                                     cGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAGGTc  >  5:63986/1‑148 (MQ=255)                                                                                                                                      gATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCTCCACTGCTGCATTGAGGAAACCCAGGt   >  6:3578/1‑146 (MQ=255)                                                                                                                                      gATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCTCCACTGCTGCATTGAGGAAACCCAGGt   <  5:3578/146‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                       GCCTTTAGCAGATCAATCGTTGAAATCGCGCCAGCCGCCCATTTCTTTCCAGCGGTTGACGATGCCGCAGAACAGCTC‑AGCGGTTTTCTCGGTGTCATAACGTGCCGAGTGCGCCTCACGCCCGTCGAAGTCGATGTCGGCGCTCTGGCAGGCCCGCGCCAGCACGGTCTGGCCATACGCCAGGCCCGCCAGGGTGGCGGTGTCGAAGCTGGAGAACGGGTGGAACGGGTTGCGCTTCAGGTCATTGCGCGCCACTGCTGCATTGAGGAAACCCAGGTC  >  NC_002947/1243798‑1244076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.