New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1782927	45 (0.760)	5 (0.090)	4/238	NT	11.0%	coding (1150/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	= 1782979	39 (0.710)					coding (1098/2703 nt)	glnD	uridylyltransferase

ATCCGGCGCAGGTTGCGGTGGATGCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCT  >  NC_002947/1782785‑1783073                                                                                                                                               |                                                                                                                                                   aTCCGGCGCAGGTTGCGGTGGATGCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTAt                                                                                                                                              >  2:195920/1‑149 (MQ=255)  tCCGGCGCAGGTTGCGGTGGATGCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTAtc                                                                                                                                             >  3:147208/1‑149 (MQ=255)     ggCGCAGGTTGCGGTGGATGCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCg                                                                                                                                          <  6:85358/149‑1 (MQ=255)       cgcAGGTTGCGGTGGATGCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCggg                                                                                                                                        <  6:325322/149‑1 (MQ=255)               gCGGTGGATGCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTgg                                                                                                                                 <  6:72925/148‑1 (MQ=255)                cGGTGGATGCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTggg                                                                                                                                <  1:186337/148‑1 (MQ=255)                        gCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCa                                                                                                                       >  1:150002/1‑149 (MQ=255)                          cGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCGATCAGCAc                                                                                                                      >  4:94161/1‑148 (MQ=255)                          cGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTATATCTCGGGGTGCTGGGCCATCAGCAc                                                                                                                      >  7:350570/1‑148 (MQ=255)                             tttCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAg                                                                                                                  <  5:347691/149‑1 (MQ=255)                                 gCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGAttt                                                                                                              >  3:86065/1‑149 (MQ=255)                                  cACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTc                                                                                                             >  3:238303/1‑149 (MQ=255)                                   aCTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCattcgccatgctggaaatcttagtgctgatggcccagcac                                                                                                            >  6:103284‑M1/1‑109 (MQ=255)                                   aCTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTgg                                                                                                                                 <  6:340075/128‑1 (MQ=255)                                   aCTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTgg                                                                                                                                 >  5:340075/1‑128 (MQ=255)                                   aCTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTc                                                                                                             >  5:318008/1‑148 (MQ=255)                                         aCAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCTGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACTCACGACCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATg                                                                                                      >  1:260097/1‑149 (MQ=255)                                                gATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGaa                                                                                                 <  7:40702/147‑1 (MQ=255)                                                  tGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggc                                                                                             <  8:349520‑M2/149‑4 (MQ=255)                                                    aaCAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggcgt                                                                                           >  7:349520‑M2/1‑144 (MQ=255)                                                       aGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGc                                                                                                                        <  6:124590/117‑1 (MQ=255)                                                       aGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGc                                                                                                                        >  5:124590/1‑117 (MQ=255)                                                        ggCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCattcgccatgctggaaatcttcgtgctgatggcccagcaccccgagataaagggcgtgcgt                                                                                       <  7:107429‑M1/149‑62 (MQ=255)                                                         gCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCattcgccatgctggaaatctttgtgctgatggcccagcaccccgagataaagggcgtgcgtg                                                                                      <  5:103284‑M1/149‑63 (MQ=255)                                                         gCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGtt                                                                                      >  1:131381/1‑149 (MQ=255)                                                         gCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTATATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGtt                                                                                      <  8:350570/149‑1 (MQ=255)                                                             gTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTc                                                                                                             <  6:327184/122‑1 (MQ=255)                                                             gTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTc                                                                                                             >  5:327184/1‑122 (MQ=255)                                                                  gCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACTGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAg                                                                                                          <  4:15291/120‑1 (MQ=255)                                                                  gCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACAGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAg                                                                                                          >  3:15291/1‑120 (MQ=255)                                                                     gATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATc                                                                                                                           <  4:278556/100‑1 (MQ=255)                                                                     gATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATc                                                                                                                           >  3:278556/1‑100 (MQ=255)                                                                      atatCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCgg                                                                         <  2:131381/149‑1 (MQ=255)                                                                            ttctggAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCgggtgggt                                                                   <  3:245535/145‑1 (MQ=255)                                                                             tGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCCGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGggtgggtg                                                                  >  2:58948/1‑149 (MQ=255)                                                                                ggAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGcc                                                               >  5:277693/1‑149 (MQ=255)                                                                                 gAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGAATGGCGAATGGCGTGCGTTTGAACACGTTCgggtgggt                                                                   >  4:245535/1‑144 (MQ=255)                                                                                    cGTGTCCTCGATCAGGTGGCGGTGGTCGCGCAGCAGGCGCACGGTCTCGGCACGCACGCCCTTTATCTCGGGGTGCCGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGa                                                           <  3:230626/149‑1 (MQ=255)                                                                                      tgtCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGata                                                         <  4:147208/149‑1 (MQ=255)                                                                                          gtcgATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCattcgccatgctggaaatcttcgtgctgatggcccagcaccccgagataaagggcgtgcgtg                                                                                      <  2:332601‑M1/116‑63 (MQ=255)                                                                                          gtcgATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCattcgccatgctggaaatcttcgtgctgatggcccagcaccccgagataaagggcgtgcgtg                                                                                      >  1:332601‑M1/1‑54 (MQ=255)                                                                                                  ggTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATg                                              >  2:21095/1‑148 (MQ=255)                                                                                                   gTGGCGGTGTTCGCGCAGCAGGCGCACGCTATCGGCACGCACGCCCTTTATCTCGGGGTGCTCGGCCATCAGCACGAAGATTTCCAGCATGGCGAAAGCCGTGCGTTTGAACACGTACGGGTGGCTGCCCTCGAGATAGCCGTCATg                                              >  5:143800/1‑147 (MQ=255)                                                                                                      gCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGc                                         <  1:195920/149‑1 (MQ=255)                                                                                                               gcgcAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACcgcg                                <  1:21095/149‑1 (MQ=255)                                                                                                                    gcagGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTc                           <  4:238303/149‑1 (MQ=255)                                                                                                                        gcgcACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCg                       <  4:86065/149‑1 (MQ=255)                                                                                                                               gTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACcgc                                 <  4:267269/132‑1 (MQ=255)                                                                                                                               gTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACcgc                                 >  3:267269/1‑132 (MQ=255)                                                                                                                                     gcacgcacGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGt                <  6:266777/143‑1 (MQ=255)                                                                                                                                     gcacgcacGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGt                >  5:266777/1‑143 (MQ=255)                                                                                                                                      cacgcacgCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgac                                          >  1:332601‑M2/1‑62 (MQ=255)                                                                                                                                      cacgcacgCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgac                                          <  2:332601‑M2/116‑55 (MQ=255)                                                                                                                                      cacgcacgCCCTTTATCTCGGGGTGCTGGGCCATCAGCACAAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgacgacacgttccgcaccgatatccgcaataccagc         <  5:103284‑M2/149‑88 (MQ=255)                                                                                                                                       acgcacgcCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgacgacacgttccgcaccgatatccgcaataccagcc        <  7:107429‑M2/149‑89 (MQ=255)                                                                                                                                         gcacgcCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACtt      >  5:122988/1‑149 (MQ=255)                                                                                                                                           acgcCattcgccatgctggaaatcttcgtgctgatggcccagcaccccgagataaagggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgacgacacgttccgcaccgatatccgcaataccagcctgtt    >  7:349520‑M1/1‑5 (MQ=255)                                                                                                                                             gcCattcgccatgctggaaatcttcgtgctgatggcccagcaccccgagataaagggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgacgacacgttccgcaccgatatccgcaataccagcctgttca  <  8:349520‑M1/149‑147 (MQ=255)                                                                                                                                             gcCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGc                                         <  8:37688/110‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   ATCCGGCGCAGGTTGCGGTGGATGCCGATTTCGCACTTGAACAGCTCGATGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCT  >  NC_002947/1782785‑1783073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.