New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1782927	45 (0.760)	5 (0.090)	4/238	NT	11.0%	coding (1150/2703 nt)	glnD	uridylyltransferase
	?	NC_002947	= 1782979	39 (0.710)					coding (1098/2703 nt)	glnD	uridylyltransferase

TGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCGAAGTGCTGGATGATCAGGTCGCACAGCTGGC  >  NC_002947/1782834‑1783127                                                                                                                                                  |                                                                                                                                                     tGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggc                                                                                                                                                   <  8:349520‑M2/149‑4 (MQ=255)   aaCAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggcgt                                                                                                                                                 >  7:349520‑M2/1‑144 (MQ=255)        gCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGtt                                                                                                                                            >  1:131381/1‑149 (MQ=255)        gCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTATATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGtt                                                                                                                                            <  8:350570/149‑1 (MQ=255)                     atatCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCgg                                                                                                                               <  2:131381/149‑1 (MQ=255)                           ttctggAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCgggtgggt                                                                                                                         <  3:245535/145‑1 (MQ=255)                            tGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCCGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGggtgggtg                                                                                                                        >  2:58948/1‑149 (MQ=255)                               ggAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGcc                                                                                                                     >  5:277693/1‑149 (MQ=255)                                gAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGAATGGCGAATGGCGTGCGTTTGAACACGTTCgggtgggt                                                                                                                         >  4:245535/1‑144 (MQ=255)                                   cGTGTCCTCGATCAGGTGGCGGTGGTCGCGCAGCAGGCGCACGGTCTCGGCACGCACGCCCTTTATCTCGGGGTGCCGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGa                                                                                                                 <  3:230626/149‑1 (MQ=255)                                     tgtCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGata                                                                                                               <  4:147208/149‑1 (MQ=255)                                                 ggTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATg                                                                                                    >  2:21095/1‑148 (MQ=255)                                                  gTGGCGGTGTTCGCGCAGCAGGCGCACGCTATCGGCACGCACGCCCTTTATCTCGGGGTGCTCGGCCATCAGCACGAAGATTTCCAGCATGGCGAAAGCCGTGCGTTTGAACACGTACGGGTGGCTGCCCTCGAGATAGCCGTCATg                                                                                                    >  5:143800/1‑147 (MQ=255)                                                     gCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGc                                                                                               <  1:195920/149‑1 (MQ=255)                                                              gcgcAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACcgcg                                                                                      <  1:21095/149‑1 (MQ=255)                                                                   gcagGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTc                                                                                 <  4:238303/149‑1 (MQ=255)                                                                       gcgcACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCg                                                                             <  4:86065/149‑1 (MQ=255)                                                                              gTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACcgc                                                                                       <  4:267269/132‑1 (MQ=255)                                                                              gTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACcgc                                                                                       >  3:267269/1‑132 (MQ=255)                                                                                    gcacgcacGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGt                                                                      <  6:266777/143‑1 (MQ=255)                                                                                    gcacgcacGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGt                                                                      >  5:266777/1‑143 (MQ=255)                                                                                     cacgcacgCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgac                                                                                                <  2:332601‑M2/116‑55 (MQ=255)                                                                                     cacgcacgCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgac                                                                                                >  1:332601‑M2/1‑62 (MQ=255)                                                                                     cacgcacgCCCTTTATCTCGGGGTGCTGGGCCATCAGCACAAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgacgacacgttccgcaccgatatccgcaataccagc                                                               <  5:103284‑M2/149‑88 (MQ=255)                                                                                      acgcacgcCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgacgacacgttccgcaccgatatccgcaataccagcc                                                              <  7:107429‑M2/149‑89 (MQ=255)                                                                                        gcacgcCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACtt                                                            >  5:122988/1‑149 (MQ=255)                                                                                            gcCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGc                                                                                               <  8:37688/110‑1 (MQ=255)                                                                                               cTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCAt                                                     >  6:133641/1‑149 (MQ=255)                                                                                                   aTCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAAGACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCgg                                                  <  6:143800/148‑1 (MQ=255)                                                                                                   aTCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCgg                                                  <  6:318008/148‑1 (MQ=255)                                                                                                    tctcGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGc                                                 <  5:133641/148‑1 (MQ=255)                                                                                                     ctcGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATc                                                    >  2:41336/1‑144 (MQ=255)                                                                                                     ctcGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATc                                                    <  1:41336/144‑1 (MQ=255)                                                                                                      tcGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAg                                              >  3:36378/1‑149 (MQ=255)                                                                                                      tcGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAg                                              >  6:106816/1‑149 (MQ=255)                                                                                                        ggggTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAgg                                             <  6:277693/148‑1 (MQ=255)                                                                                                           gTGCTGGGCCATCAGCACTAAGATTTCCAGCATGGCGAATggcgtgcgtgccgataccgtgcgcctgctgcgcgaacaccgccacctgatcgacgacacgttccgcaccgatatccgcaataccagcctgttcatcgagctgttcaagt                                         >  6:103284‑M2/1‑40 (MQ=255)                                                                                                              cTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAAcc                                       >  4:173125/1‑148 (MQ=255)                                                                                                                   ccATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCg                                 <  3:173125/149‑1 (MQ=255)                                                                                                                     aTCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCg                                 >  2:134871/1‑147 (MQ=255)                                                                                                                         gCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAAc                                        >  2:190583/1‑136 (MQ=255)                                                                                                                         gCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAAc                                        <  1:190583/136‑1 (MQ=255)                                                                                                                             gAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCGAAGTGCTGga                       >  1:218665/1‑149 (MQ=255)                                                                                                                                  tttCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGTCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCGAAGTGCTGGATGATc                  <  1:58948/149‑1 (MQ=255)                                                                                                                                      cAGCATGGCGAATGGCGTGCGTTTGAACACTTTCGGGTGGGTGGCCTCTATATAGCCGTCATGCAGTCGTAACCGCGCATTCAGCTGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCGAAGTGCTGGATGATCAGGt              <  2:260097/149‑1 (MQ=255)                                                                                                                                      cAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTGAGAAGTGCTGGCTGATAAGGt              >  6:264588/1‑149 (MQ=255)                                                                                                                                        gCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCgg                                                                            >  2:378729/1‑85 (MQ=255)                                                                                                                                        gCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCgg                                                                            <  1:378729/85‑1 (MQ=255)                                                                                                                                              cGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCGAAGTGCTGGATGATCAGGTCGCACAgc      <  1:257096/149‑1 (MQ=255)                                                                                                                                                  tGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGTCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCGAAGTGCTGGATGATCAGGTCGCACAgctggc  <  4:36378/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TGAACAGGCTGGTATTGCGGATATCGGTGCGGAACGTGTCGTCGATCAGGTGGCGGTGTTCGCGCAGCAGGCGCACGGTATCGGCACGCACGCCCTTTATCTCGGGGTGCTGGGCCATCAGCACGAAGATTTCCAGCATGGCGAATGGCGTGCGTTTGAACACGTTCGGGTGGGTGGCCTCGATATAGCCGTCATGCAGGCGGAACCGCGCATTCAGCGGCTGGGTGCTGCCACTTTCCTCATCGGCGAGGATAACCTCTTCGAAGTGCTGGATGATCAGGTCGCACAGCTGGC  >  NC_002947/1782834‑1783127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.