New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2032810 =	NA (NA)	5 (0.090)	5/244	NT	20.0%	coding (291/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase
	?	NC_002947	2032835 =	21 (0.360)					coding (316/1665 nt)	pgi‑I	glucose 6‑phosphate isomerase

CGCTTGCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGAACGTCATG  >  NC_002947/2032663‑2032879                                                                                                                                                     |                                                                      cgcTTGCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAATGCCTCGGAAGGCCGTc                                                                      >  6:376187/1‑149 (MQ=21)   cTTGCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCg                                                                    <  1:139703/149‑1 (MQ=34)      gCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGtg                                                                 >  8:142193/1‑149 (MQ=34)      gCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGt                                                                  <  7:75152/148‑1 (MQ=34)          ccTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCGAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCTGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGtgctgc                                                             <  6:375691/149‑1 (MQ=21)           cTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGca                                                            >  1:276093/1‑149 (MQ=34)                ccTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACAcc                                                        <  7:41901/148‑1 (MQ=34)                  tCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGcc                                                     >  6:146405/1‑149 (MQ=34)                  tCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGcc                                                     >  4:159818/1‑149 (MQ=34)                         ctCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGcc                                              >  6:110269/1‑149 (MQ=34)                                aaCCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGt                                       <  7:142193/149‑1 (MQ=32)                                      aTCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGa                                 <  7:227537/149‑1 (MQ=32)                                      aTCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGa                                 <  5:26646/149‑1 (MQ=32)                                        cACCGAGCAAAGCCGCGATCTGCTGGTCACCCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGCTGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGGGCTGCACACCGCCTTGCGCCGGCCTGTAGGTgcc                                >  3:220481/1‑146 (MQ=12)                                        cACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGGGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGAc                                >  3:215617/1‑148 (MQ=17)                                         aCCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGACTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACa                               >  1:63873/1‑148 (MQ=17)                                         aCCGAGCAAAGCCGCGATCTGCTGGTAAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACa                               <  5:110269/148‑1 (MQ=17)                                          ccGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACaaa                             >  2:300700/1‑149 (MQ=32)                                                 aaGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCg                      >  3:313843/1‑149 (MQ=32)                                                    ccGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCC‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTc                    >  5:339679/1‑148 (MQ=17)                                                      gcgATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAAc                 >  5:56955/1‑149 (MQ=32)                                                      gcgATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCATCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAAc                 >  8:99887/1‑149 (MQ=17)                                                          tCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCg             >  4:368692/1‑149 (MQ=32)                                                           ctgctgGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGt            >  4:188864/1‑149 (MQ=32)                                                             gctgGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTg           >  7:56194/1‑148 (MQ=32)                                                              ctgGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGt            <  3:159818/146‑1 (MQ=32)                                                               cggTCAACCTGGCCAATGAAGTGGGCCTAGCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGaa         >  1:23470/2‑149 (MQ=17)                                                                    aaCCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAAc                 >  4:256403/1‑135 (MQ=32)                                                                    aaCCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAAc                 <  3:256403/135‑1 (MQ=32)                                                                    aaCCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCCGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGAACGTCAt   >  8:262927/1‑149 (MQ=17)                                                                     aCCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGAACGTCATg  >  1:185179/1‑149 (MQ=31)                                                                                                                                                     |                                                                      CGCTTGCGGCCTGTTCCTCGACTACTCAAAAAACCTGATCACCGAGCAAAGCCGCGATCTGCTGGTCAACCTGGCCAATGAAGTGGGCCT‑GCAGGACGCCATCAAGTCGATGTTCAGCGGTGAGATCATCAACGCCTCCGAAGGCCGTCCGGTGCTGCACACCGCCTTGCGCCGGCCTGTAGGTGACAAACTCAGCGTCAACGGCGTGAACGTCATG  >  NC_002947/2032663‑2032879

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.