| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2099960 = | 35 (0.590) | 5 (0.100) | 5/210 | NT | 15.9% | intergenic (‑71/‑134) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein |
| ? | NC_002947 | 2100055 = | 24 (0.500) | intergenic (‑166/‑39) | PP_1875/PP_1876 | two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein | |||||
CTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGC > NC_002947/2099812‑2100105 | cttgTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTgg < 6:289492/149‑1 (MQ=255) ttgTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGgc > 3:175908/1‑149 (MQ=255) cagtgtggtgccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgc > 2:16797‑M1/148‑149 (MQ=255) cagtgtggtgccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgc > 6:340805‑M1/148‑149 (MQ=255) gTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGgc < 2:22124/147‑1 (MQ=255) tGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGccc < 2:272838/148‑1 (MQ=255) tgccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcg > 8:331851‑M1/140‑140 (MQ=255) tgccccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcg < 7:331851‑M1/1‑1 (MQ=255) ccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgcgc < 5:271711‑M1/4‑1 (MQ=255) ccagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgcgc > 6:271711‑M1/136‑139 (MQ=255) cagtcgatgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCggg < 6:313442‑M1/15‑1 (MQ=255) ggTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCtt < 8:180805/148‑1 (MQ=255) gTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGc > 8:106326/1‑149 (MQ=255) tGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGc < 3:225567/148‑1 (MQ=255) atgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccattaccgattcggcgcgttccagaaaagcgctcaagagagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGcc > 8:297773‑M1/129‑149 (MQ=255) atgtgcgggcgttgtgccggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGcc > 4:192416‑M1/129‑149 (MQ=255) atCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCca > 1:219699/1‑147 (MQ=255) tCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGGCCGGTACCCCAg > 4:234574/1‑149 (MQ=255) ccATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAgg > 6:222416/1‑149 (MQ=255) ccATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTCGCCCGTTCCCACAgg > 8:64408/1‑149 (MQ=255) cggcaacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGCTCCCACAGGTACAg < 3:328089‑M1/38‑1 (MQ=255) ccggAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGAATAGCCTAATAGCCCCGGCTGCTGGTTGGTC‑TGTCTGTTCATTTCAGTTGATCGCCATGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCt < 5:39222/145‑1 (MQ=39) cGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGccc > 8:220088/1‑128 (MQ=255) cGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGccc < 7:220088/128‑1 (MQ=255) aacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgc < 6:324489‑M1/2‑1 (MQ=255) aacaggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcgc > 5:324489‑M1/108‑109 (MQ=255) ggggttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccaagacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGccc < 6:291214‑M1/46‑1 (MQ=255) ccGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGcccc < 5:158067/149‑1 (MQ=255) gttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCg > 4:127465‑M1/101‑123 (MQ=255) gttcaaggcgcgccagtaccgattcggcgcggtccagaaaagcgatcaagcgagcgtccatgacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCg < 3:127465‑M1/23‑1 (MQ=255) ccGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGc < 5:74481/138‑1 (MQ=255) ccGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGc > 6:74481/1‑138 (MQ=255) ccGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGa < 5:391358/148‑1 (MQ=255) cTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGGCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAg < 7:154917/149‑1 (MQ=255) cgctgcgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCcgcg < 2:46936/97‑1 (MQ=255) cgctgcgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCcgcg > 1:46936/1‑97 (MQ=255) ctgcgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgt < 7:106326/149‑1 (MQ=255) cgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCtgtg < 3:264731/147‑1 (MQ=255) cgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTgg < 5:222416/148‑1 (MQ=255) cgcAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTCGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTgg < 7:64408/148‑1 (MQ=255) ggtccagaaaagcgatcaagcgagcgtccaagacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCaa > 5:291214‑M1/71‑149 (MQ=255) ccGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGc < 2:219699/149‑1 (MQ=255) ccGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCGTAGACCCAGGCGGCACGCAAGCCCTGTGGGCGCGGGccacc > 7:278882/1‑145 (MQ=39) cGAATAGCCCCGGCTGCTGGTGGGTCGTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTgg > 1:3882/1‑69 (MQ=255) cGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTgg < 2:3882/68‑1 (MQ=255) aTAGCCCGGGGGGCTGGGGGGTC‑TGTGTGTTAATTTCTTTTGATCGCCAAGGGGGGGCGGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGAAAGCCcgc < 4:175908/149‑1 (MQ=255) ccccGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCTCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAg < 6:384489/149‑1 (MQ=255) gtctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCCGTTACCACAGGTACAGCTTAGCCCCCGGCTGGACGCAAGCCCGGTGGGAGCGGGGAACCCCGCGGAGGGGCGCGCCGCGGcccccc > 5:75478/1‑147 (MQ=255) gacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGc > 2:112144‑M1/40‑116 (MQ=255) gacgactcctaacaatctcagttttttgggggccgctgcGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGc < 1:112144‑M1/77‑1 (MQ=255) gtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCCGTTACCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCCAGCCCGCGGAGGGGCGCGCAGCGGCCCCCaaaaaa > 1:46608/1‑149 (MQ=255) ttcttttGATCGCCACGGGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCGGTTCCCACCGTTACCGCTTCGCCCCCGGCTTACCGCAAGCCGTGGGGGTGGGGGAAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTgag < 2:46608/143‑1 (MQ=255) tGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCCCGTACCCCACGTACAGCGTATCCCCCGGCGGAACCCCAGCCCGGGGGGCGCGGGCCAGCCCGCCGACGGGCGCGCCGCGGCCCCCCAAAAAAAGAGATTGTTa > 4:120370/1‑149 (MQ=255) gATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCt > 7:278011/1‑88 (MQ=255) gATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCt < 8:278011/88‑1 (MQ=255) gCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCCTTCCCACACGTACAGCTTAGCCCCCGGCGGAACGCAAGCCCGGGGGGAGCGGGCAAGCCCGCGGCGGGGCGCGCCGCGGCCCCCAAAAAACGGAGATTGTTTGGAgt > 6:388855/1‑149 (MQ=255) aaGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGCCTTAACGCAAGCCCTGTGGTAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGAtt < 5:171712/137‑1 (MQ=255) gggCCGCTTGGGGCCCCTCCGCGGGCTGGCCCGTCCCCACTGTAACAGCTTCCCCCCCGGCTAAACGAACCCCGTGTGGCTGGGGGAAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGa < 6:75478/149‑1 (MQ=255) ggCGCCCCGCCGCGGGCTTGCCCGTTCCCACCGGCACAGCTTCGCCCCAGCCTCAACGCCCCCCCGGGGGGAGCGGGAACGCCCGCAGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc < 4:203264/147‑1 (MQ=255) | CTTGTATGACAGGCGATTGGTGAACTTGATATCCATGAGTCCCGAGCCGGTTTCCCGTTCCTTGCGCTGCGCAAGCATAGCCGAATAGCCCCGGCTGCTGGTGGGTC‑TGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGC > NC_002947/2099812‑2100105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |