New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2099960 =	35 (0.590)	5 (0.100)	5/210	NT	15.9%	intergenic (‑71/‑134)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	2100055 =	24 (0.500)					intergenic (‑166/‑39)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein

GTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGGC  >  NC_002947/2099920‑2100203                                                                                                                                        |                                                                                                                                                     gtctgtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCCGTTACCACAGGTACAGCTTAGCCCCCGGCTGGACGCAAGCCCGGTGGGAGCGGGGAACCCCGCGGAGGGGCGCGCCGCGGcccccc                                                                                                                                          >  5:75478/1‑147 (MQ=255)     gtTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCCGTTACCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCCAGCCCGCGGAGGGGCGCGCAGCGGCCCCCaaaaaa                                                                                                                                     >  1:46608/1‑149 (MQ=255)           ttcttttGATCGCCACGGGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCGGTTCCCACCGTTACCGCTTCGCCCCCGGCTTACCGCAAGCCGTGGGGGTGGGGGAAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTgag                                                                                                                                <  2:46608/143‑1 (MQ=255)                 tGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTTCCCCGTACCCCACGTACAGCGTATCCCCCGGCGGAACCCCAGCCCGGGGGGCGCGGGCCAGCCCGCCGACGGGCGCGCCGCGGCCCCCCAAAAAAAGAGATTGTTa                                                                                                                         >  4:120370/1‑149 (MQ=255)                      gCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCCTTCCCACACGTACAGCTTAGCCCCCGGCGGAACGCAAGCCCGGGGGGAGCGGGCAAGCCCGCGGCGGGGCGCGCCGCGGCCCCCAAAAAACGGAGATTGTTTGGAgt                                                                                                                    >  6:388855/1‑149 (MQ=255)                         aaGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGCCTTAACGCAAGCCCTGTGGTAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGAtt                                                                                                                             <  5:171712/137‑1 (MQ=255)                               gggCCGCTTGGGGCCCCTCCGCGGGCTGGCCCGTCCCCACTGTAACAGCTTCCCCCCCGGCTAAACGAACCCCGTGTGGCTGGGGGAAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGa                                                                                                           <  6:75478/149‑1 (MQ=255)                                        ggCGCCCCGCCGCGGGCTTGCCCGTTCCCACCGGCACAGCTTCGCCCCAGCCTCAACGCCCCCCCGGGGGGAGCGGGAACGCCCGCAGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctcgc                                                                                                    <  4:203264/147‑1 (MQ=255)                                                        CTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgct                                                                                                       <  6:119315‑M1/128‑1 (MQ=255)                                                        CTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgct                                                                                                       >  5:119315‑M1/1‑128 (MQ=255)                                                         ttgcccgctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCTTGGACGCTCGCTTGATCGCTTTTCTGGAcc                                                                                 >  5:291214‑M2/80‑149 (MQ=255)                                                           gcccgctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAgtcgtc                                                                                                                <  1:112144‑M2/39‑1 (MQ=255)                                                           gcccgctcccacagggcttgcgttcagcctggggctaagctgtacctgtgggaacgggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAgtcgtc                                                                                                                >  2:112144‑M2/78‑116 (MQ=255)                                                             CCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCgcgc                                                                             <  7:41229‑M1/149‑1 (MQ=255)                                                               GTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGCCCGCGcc                                                                            <  8:272321‑M1/148‑1 (MQ=255)                                                                  cccACTGGAACCGCTTCCCCCCAGGCTCAACGCACGCCCGGTGGGAGGGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAAt                                                                        <  3:120370/149‑1 (MQ=255)                                                                   ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctc                                                                                                      <  6:320189/118‑1 (MQ=255)                                                                   ccACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGAcgctc                                                                                                      >  5:320189/1‑118 (MQ=255)                                                                       aGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTa                                                                   >  7:45932/1‑149 (MQ=255)                                                                           aCAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTgg                                                               >  5:169833/1‑149 (MQ=255)                                                                                 tAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGc                                                                                            >  8:293835/1‑114 (MQ=255)                                                                                 tAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGc                                                                                            <  7:293835/114‑1 (MQ=255)                                                                                     cccAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAAt                                                                        >  1:152908/1‑130 (MQ=255)                                                                                     cccAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAAt                                                                        <  2:152908/130‑1 (MQ=255)                                                                                       cAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACt                                                                                                                                   >  4:173080/1‑69 (MQ=255)                                                                                       cAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACt                                                                                                                                   <  3:173080/69‑1 (MQ=255)                                                                                          gggctaagctgtacctgtgggaacgggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCTTGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAcccc                                                <  6:291214‑M2/103‑1 (MQ=255)                                                                                            tGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCt                                                                                      <  5:102508/109‑1 (MQ=255)                                                                                              aaCGCACGCCCTGGGGGAGGGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGt                                             <  5:388855/148‑1 (MQ=255)                                                                                                  ctgtacctgtgggagcgggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCg                                        <  3:328089‑M2/111‑1 (MQ=255)                                                                                                    aGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGc                                      <  8:41229/149‑1 (MQ=255)                                                                                                      cccTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATg                                                                                                             >  8:355602/1‑76 (MQ=255)                                                                                                      cccTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATg                                                                                                             <  7:355602/76‑1 (MQ=255)                                                                                                               aGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCg                            >  5:50339/1‑148 (MQ=255)                                                                                                                 cgggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAc                                                   <  3:127465‑M2/100‑1 (MQ=255)                                                                                                                 cgggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAc                                                   >  4:127465‑M2/24‑123 (MQ=255)                                                                                                                   ggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCTCTTGAGCGCTTTTCTGGAACGCGCCGAATCGGTAATGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACAt                       >  8:297773‑M2/22‑149 (MQ=255)                                                                                                                   ggcaagcccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACAt                       >  4:192416‑M2/22‑149 (MQ=255)                                                                                                                         cccgcggaggggcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTg                 <  6:313442‑M2/134‑1 (MQ=255)                                                                                                                                    gcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg                <  5:271711‑M2/135‑1 (MQ=255)                                                                                                                                    gcgcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg                >  6:271711‑M2/5‑139 (MQ=255)                                                                                                                                      gcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGtt                                            >  5:324489‑M2/3‑109 (MQ=255)                                                                                                                                      gcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGtt                                            <  6:324489‑M2/107‑1 (MQ=255)                                                                                                                                      gcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTg    >  6:340805‑M2/3‑149 (MQ=255)                                                                                                                                      gcGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTg    >  2:16797‑M2/3‑149 (MQ=255)                                                                                                                                       cGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGca            <  7:331851‑M2/139‑1 (MQ=255)                                                                                                                                       cGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGca            >  8:331851‑M2/2‑140 (MQ=255)                                                                                                                                        gcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTgg                <  2:70272/135‑1 (MQ=255)                                                                                                                                        gcAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGGc  <  5:340805/149‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                     GTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACAGCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCGCACATCGACTGGGGCACCACACTGGC  >  NC_002947/2099920‑2100203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.