| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2202174 = | 36 (0.610) | 5 (0.090) | 5/238 | NT | 12.0% | intergenic (+31/‑150) | PP_1946/PP_1947 | short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein |
| ? | NC_002947 | 2202214 = | 40 (0.730) | intergenic (+71/‑110) | PP_1946/PP_1947 | short‑chain dehydrogenase/reductase family oxidoreductase/hypothetical protein | |||||
GCGTTCGGTTCTGTGGCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGGAGAGT > NC_002947/2202026‑2202319 | gcgTTCGGTTCTGTGGCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGAt < 7:323069/149‑1 (MQ=255) gTTCGGTTCTGTGGCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATgc > 1:12707/1‑149 (MQ=255) aagcaccttaaccaaatcttgattgttcaattgaactctccatttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTa > 8:252289‑M1/141‑148 (MQ=255) aagcaccttaaccaaatcttgattgttcaattgaactctccatttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAg < 8:92652‑M1/9‑1 (MQ=255) aagcaccttaaccaaatcttgattgttcaattgaactctccatttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAg < 6:12089‑M1/9‑1 (MQ=255) tgGCTGTGTTCTGACGATGCAAAATACGTTGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTtctc < 2:12707/149‑1 (MQ=255) ttCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGc > 7:82647/1‑149 (MQ=255) gattgttcaattgaactctccatttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAGTTCTCGCCATTGCTTGGt < 2:301448‑M1/27‑1 (MQ=255) aTGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTGAg > 4:354388/1‑149 (MQ=255) tgaaaaaTACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGTTGTCTTTTAAATCCATGAAAAATTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTaat > 1:122942/4‑147 (MQ=255) aattgaactctccatttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTgcgc > 4:179092‑M1/113‑117 (MQ=255) aattgaactctccatttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTgcgc < 3:179092‑M1/5‑1 (MQ=255) ggtggGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACt < 8:82647/148‑1 (MQ=255) ctctccatttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACtat > 1:301448‑M1/106‑149 (MQ=255) ccATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGtt > 6:208778/1‑149 (MQ=255) catttattgcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATaa > 3:358613‑M1/101‑146 (MQ=255) gATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTAttt > 2:240854/1‑149 (MQ=255) gATGTCAGGCGACGGTGGCGGGGCAGTGACTGCGGTTGGTACTCGTATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCTCACTATAAGTTTTAtt < 5:350439/148‑1 (MQ=255) gcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑Ggcg < 2:78151‑M1/38‑1 (MQ=255) gcagtggcaaaaagtaggcggcagacagcgtgcaataaatacccacaggtaaaaatcacaaaaccaaatttcagatcaaataaaacttatagTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑Ggcg > 1:78151‑M1/93‑130 (MQ=255) gACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAAt > 1:53200/1‑149 (MQ=255) aCGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAAtt > 6:316722/1‑149 (MQ=255) aCGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTAGTTGATGTGAAAtt > 6:219545/1‑149 (MQ=255) gtggcgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTGAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑Tgg < 3:354388/149‑1 (MQ=255) tggcgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGa > 6:39541/1‑141 (MQ=255) tggcgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGa < 5:39541/141‑1 (MQ=255) gcgtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGtt < 2:53200/148‑1 (MQ=255) gtggcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTtg > 2:79028/1‑149 (MQ=255) gcAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGa > 2:165542/1‑149 (MQ=255) aCTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGAttttt < 3:323573/148‑1 (MQ=255) cGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCtg > 4:229921/1‑149 (MQ=255) ttGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTgg < 5:208778/149‑1 (MQ=255) tACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTtg > 2:352041/1‑129 (MQ=255) tCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGtattta > 5:202111/1‑149 (MQ=255) gAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGtatttat < 2:122942/148‑1 (MQ=255) gAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGtat < 2:184939/144‑1 (MQ=255) gAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGtat > 1:184939/1‑144 (MQ=255) gatCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACATGTGGGTATTTATTGCACGCTg > 3:331945/1‑149 (MQ=255) tctcTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGAt > 8:18657/1‑98 (MQ=255) tctcTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGAt < 7:18657/98‑1 (MQ=255) ttAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATTCTGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTg < 1:79028/146‑1 (MQ=255) tGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGACGCGTACttttt > 4:41476/1‑149 (MQ=255) gTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTg > 2:119666/1‑149 (MQ=255) gCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCa > 6:341908/1‑149 (MQ=255) ttGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTg < 6:202111/149‑1 (MQ=255) tGGTTATGAATGGATGCGCCTAGTTCTCGCCCTTGCTTGGTACGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCAGTGGGTATTTATTGCACGCTGTCTGACGCCTACTTTTTGACACTGCaa > 5:267908/1‑148 (MQ=255) gAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGga > 2:153715/1‑149 (MQ=255) aaTGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGga < 1:153715/148‑1 (MQ=255) aTGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATg > 5:27604/1‑145 (MQ=255) gATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTAGGGCGCAGTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGAACGCTGTATGCCGCCTACTTTTTGCCACTGCATTAAATGGAGAGt > 1:258675/1‑149 (MQ=255) aTGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACg > 8:151770/1‑105 (MQ=255) | GCGTTCGGTTCTGTGGCTGTGTTCTGACGATGCAAAATACGTGGTGGGCCATTCGATGTCAGTCGACGGTGGCGTGGCAGTGACTGCGGTTGGTACTCGAATGGATGATCTCTTTTAAATCCATGTAGCGTTGCTGGTTATGAATGGATGCGCCTAGTTCTCGCCATTGCTTGGTAAGGCTA‑GGCGCACTATAAGTTTTATTTGATCTGAAATT‑TGGTTTTGTGATTTTTACCTGTGGGTATTTATTGCACGCTGTCTGCCGCCTACTTTTTGCCACTGCAATAAATGGAGAGT > NC_002947/2202026‑2202319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |