| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2236919 = | 36 (0.610) | 4 (0.080) | 3/224 | NT | 12.2% | intergenic (+14/+114) | uvrB/PP_1975 | uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter |
| ? | NC_002947 | 2237010 = | 26 (0.500) | intergenic (+105/+23) | uvrB/PP_1975 | uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter | |||||
CGAGATCACCAAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTC > NC_002947/2236776‑2237062 | gctgatcatggcttacaacgatgccttccactttgtcgggatcgggttggcggtgagcatggtggcggtgctgctgacccgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCtg < 6:317273‑M1/5‑1 (MQ=255)gctgatcatggcctacaacgctgccggccactttgtcgggctcgggttggcggtgagcatggtggcggtgctgctgacccgcaagttgccggaagggttgaaggctggggacgcccattgaggctaatacagatcagatgcggtCCCtg > 6:304066‑M1/145‑149 (MQ=255) agaTCACCAAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTgg < 2:295505/149‑1 (MQ=255) atcatggcttacaacgatgccttccactttgtcgggatcgggttggcggtgagcatggtggcggtgctgctgacccgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCTGTgg > 3:18075‑M1/141‑148 (MQ=255) aTCACCAAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTgg > 3:42235/1‑147 (MQ=255) tggcttacaacgatgccttccactttgtcgggatcgggttggcggtgagcatggtggcggtgctgctgacccgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCTGTGGgagtg < 8:337737‑M1/13‑3 (MQ=255) ggcttacaacgatgccttccactttgtcgggatcgggttggcggtgagcatggtggcggtgctgctgacccgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCTGTGGGAGCgg < 5:160514‑M1/14‑1 (MQ=255) cAAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCtgt > 2:2653/1‑140 (MQ=255) cAAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCtgt < 1:2653/140‑1 (MQ=255) cAAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCggg > 1:272976/1‑149 (MQ=255) aGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCg > 1:28155/1‑149 (MQ=255) gcgcATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGt > 6:261367/1‑149 (MQ=255) caacgatgccttccactttgtcgggatcgggttggcggtgagcatggtggcggtgctgctgacccgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCTGTGGGAGCGGGCGTGc < 2:152539‑M1/20‑1 (MQ=255) cATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGcc > 5:304761/1‑149 (MQ=255) aGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCga < 2:28155/149‑1 (MQ=255) aGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCgaag > 7:137003/1‑148 (MQ=255) ttGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAAt > 1:120935/1‑149 (MQ=255) gaACATGATGCAGTTCGCCCGCGACCTGGAGTTCGACGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGGTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAAcgcg < 6:132005/149‑1 (MQ=255) gCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCAGGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGtggctgg > 1:298905/1‑149 (MQ=255) gCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCt > 8:195309/1‑149 (MQ=255) cgcgACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTgc < 6:174173/148‑1 (MQ=255) cgcgACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTgc > 5:174173/1‑148 (MQ=255) gACCTGGAGTTCGAAGCTGCGGCTCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCg < 2:298905/149‑1 (MQ=255) gACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCg < 4:42235/149‑1 (MQ=255) tggcggtgctgctgacccgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTc < 1:345556‑M1/67‑1 (MQ=255) cGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCaa < 5:36334/112‑1 (MQ=255) cGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCaa > 6:36334/1‑112 (MQ=255) gtgctgctgacccgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCggg > 2:345556‑M1/78‑149 (MQ=255) tgctgctgacccgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCTGTGGGAGCGGGCATGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGc > 5:5127‑M1/77‑149 (MQ=255) gCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATg < 6:304761/149‑1 (MQ=255) gcgcAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTTGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGca > 2:257672/1‑148 (MQ=255) gcAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTcc < 4:137589/149‑1 (MQ=255) cgcaagttgccggaagggttgaaggctggggaagcccattgaggctattacagatcagatgcggtCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCGGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCccgcgcc > 1:152539‑M1/66‑146 (MQ=255) gACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGAcc > 3:187175/1‑149 (MQ=255) aCGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCg < 5:236846/134‑1 (MQ=255) aCGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCg > 6:236846/1‑134 (MQ=255) gcA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAAAGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCatctgatct > 6:160514/1‑149 (MQ=255) cA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCatctgatctg < 5:261367/149‑1 (MQ=255) cTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTaa < 2:120935/149‑1 (MQ=255) gggAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGc < 7:195309/149‑1 (MQ=255) ttGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATgg > 5:144527/1‑149 (MQ=255) gcagcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTAAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTccc > 1:327216/1‑149 (MQ=255) agcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCa < 8:137003/149‑1 (MQ=255) cTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCCCCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGc < 2:329706/149‑1 (MQ=255) gAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCt > 5:391109/1‑149 (MQ=255) ccGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCaa < 5:204796/149‑1 (MQ=255) gcgGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTc < 6:144527/149‑1 (MQ=255) gcgGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTc > 4:288193/1‑149 (MQ=255) | CGAGATCACCAAGCGCATCAAGCAGTTGGAAGAGAAAATGATGCAGTTCGCCCGCGACCTGGAGTTCGAAGCTGCGGCGCAGTTGCGTGACGAGATTGCGCA‑GCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTC > NC_002947/2236776‑2237062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |