New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2236919 =	36 (0.610)	4 (0.080)	3/224	NT	12.2%	intergenic (+14/+114)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter
	?	NC_002947	2237010 =	26 (0.500)					intergenic (+105/+23)	uvrB/PP_1975	uvrABC excinuclease protein B/EmrB/QacA family drug resistance transporter

GACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGTAAGCCATGATCAGC  >  NC_002947/2236864‑2237153                                                                                                                                                   |                                                                                                                                                gACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGAcc                                                                                                                                               >  3:187175/1‑149 (MQ=255)            gcAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAAAGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCatctgatct                                                                                                                                    >  6:160514/1‑149 (MQ=255)             cAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCatctgatctg                                                                                                                                   <  5:261367/149‑1 (MQ=255)                cTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTaa                                                                                                                                <  2:120935/149‑1 (MQ=255)                    gggAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGc                                                                                                                            <  7:195309/149‑1 (MQ=255)                            ttGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATgg                                                                                                                    >  5:144527/1‑149 (MQ=255)                                   gcagcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTAAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTccc                                                                                                             >  1:327216/1‑149 (MQ=255)                                     agcTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCa                                                                                                           <  8:137003/149‑1 (MQ=255)                                       cTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCCCCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGc                                                                                                         <  2:329706/149‑1 (MQ=255)                                         gAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCt                                                                                                       >  5:391109/1‑149 (MQ=255)                                             ccGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCaa                                                                                                   <  5:204796/149‑1 (MQ=255)                                                   gcgGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTc                                                                                             <  6:144527/149‑1 (MQ=255)                                                   gcgGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTc                                                                                             >  4:288193/1‑149 (MQ=255)                                                             TGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTg                                                                                   <  3:214393‑M1/149‑1 (MQ=255)                                                               ggcgcgggcatgcccgcgaacaccggcgcagccggtgcccgccaccgcgttgaattcttcgcgggcacgcccgctcccacagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCg                                                                                 >  1:152539‑M2/85‑149 (MQ=255)                                                               GGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCg                                                                                 >  3:288193‑M1/1‑149 (MQ=255)                                                               GGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCg                                                                                 <  4:334083‑M1/149‑1 (MQ=255)                                                                GAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCgg                                                                                >  6:391109‑M1/1‑149 (MQ=255)                                                                    GGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTca                                                                            >  2:272976‑M1/1‑149 (MQ=255)                                                                          gcccgcgaacaccggcgcagccggtgccagccaccgcgttgaattcttcgcgggcatgcccgctcccacagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAgcagca                                                                      >  5:5127‑M2/74‑149 (MQ=255)                                                                           cccgcgaacaccggcgcagccggtgccagccaccgcgttgaattcttcgcgggcacgcccgctcccacagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCAc                                                                     >  2:345556‑M2/73‑149 (MQ=255)                                                                                gaagaaTTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGcca                                                                >  7:254643/1‑149 (MQ=255)                                                                                gaacaccggcgcagccggtgccagccaccgcgttgaattcttcgcgggcacgcccgctcccacagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGcca                                                                <  1:345556‑M2/82‑1 (MQ=255)                                                                                     aTTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCAt                                                            <  4:187175/148‑1 (MQ=255)                                                                                      ttCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGc                                                          >  1:184408/1‑149 (MQ=255)                                                                                         aaCGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCAGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCa                                                       >  1:268634/1‑149 (MQ=255)                                                                                          aCGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCAc                                                      <  3:334083/149‑1 (MQ=255)                                                                                                        aCCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCACCCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATcc                                        >  5:317273/1‑149 (MQ=255)                                                                                                         ccGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCAGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATccc                                       >  6:127986/1‑149 (MQ=255)                                                                                                           ggCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCAGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGa                                     <  5:127986/149‑1 (MQ=255)                                                                                                              tGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGc                                                   <  5:261614/132‑1 (MQ=255)                                                                                                              tGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGc                                                   >  6:261614/1‑132 (MQ=255)                                                                                                                    ggTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCCCACCGCCAACCCGATCCCGACAAAGTGGa                            <  1:257672/149‑1 (MQ=255)                                                                                                                           gcgGGCATGCCCGCTCACACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATc                     <  8:254643/149‑1 (MQ=255)                                                                                                                            cgGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCg                    <  6:5127/149‑1 (MQ=255)                                                                                                                             gggCATGCCCGCTCCCACAGGGACCGCATCTGAGCTGTAATAGCCTCAATGGGCTTCCCCAGACTTCAACCCTTCCGGCAACTTGCGGGTAAGCAGCACCGACACCATGTTCACCGCCCACCAGATCCCGACAAAGTGGAAGGCATGGt                   >  6:120528/1‑149 (MQ=255)                                                                                                                               gcacgcccgctcccacagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTg                 <  2:152539‑M2/129‑1 (MQ=255)                                                                                                                                cATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGt                <  3:134627/149‑1 (MQ=255)                                                                                                                                  tGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGTaa              <  2:327216/149‑1 (MQ=255)                                                                                                                                  tGCCCACTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGt                >  7:337737/1‑147 (MQ=255)                                                                                                                                     ccgctcccacagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGTAAGcc           <  5:160514‑M2/135‑1 (MQ=255)                                                                                                                                      cactcccacagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGTAAGCCa          <  8:337737‑M2/136‑1 (MQ=255)                                                                                                                                           ccacagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGTAAGCCATGAt      >  3:18075‑M2/9‑148 (MQ=255)                                                                                                                                              cagggACCGCATCTGATCTGTATTAGCCTCAATGGGCGTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGAGCCCGACAAAGTGGCCGGCAGCGTTGTAGGCCATGATCAgc  >  6:304066‑M2/6‑149 (MQ=255)                                                                                                                                              cagggACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGTAAGCCATGATCAgc  <  6:317273‑M2/144‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                GACGAGATTGCGCAGCTGCGGGAGCGGTTGATCAGCAGCTGAAGCCGGGCGCGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAGAATTCAACGCGGTGGCTGGCACCGGCTGCGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGACCGCATCTGATCTGTAATAGCCTCAATGGGCTTCCCCAGCCTTCAACCCTTCCGGCAACTTGCGGGTCAGCAGCACCGCCACCATGCTCACCGCCAACCCGATCCCGACAAAGTGGAAGGCATCGTTGTAAGCCATGATCAGC  >  NC_002947/2236864‑2237153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.