New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2464934 =	42 (0.710)	6 (0.100)	6/248	NT	12.5%	coding (704/1353 nt)	PP_2157	sensor histidine kinase
	?	NC_002947	2464973 =	43 (0.750)					coding (665/1353 nt)	PP_2157	sensor histidine kinase

CTGCGCCATCCATTGCAGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCC  >  NC_002947/2464786‑2465076                                                                                                                                                     |                                                                                                                                                  gtgcctgggccgcccgcagcggcctgcgcccattgcggcagatgggccaggtggccgccagcgtgtcagcgcgctccctcaccacccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatg                                                                                                                                                   >  6:284124‑M1/149‑149 (MQ=255)     gcCATCCATTGCAGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGa                                                                                                                                              <  4:224380/149‑1 (MQ=255)         tccatTGCAGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAgg                                                                                                                                          >  6:13296/1‑149 (MQ=255)             ttGCAGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCt                                                                                                                                      >  2:103750/1‑149 (MQ=255)              ccgcagcggcctgcgcccattgcggcagatgggccaggtggccgccagcgtgtcagcgcgctccctcaccacccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatG‑CTGACAGGCGCTg                                                                                                                                     <  6:170076‑M1/14‑1 (MQ=255)                cAGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑Ct                                                                                                                                                <  3:323837/136‑1 (MQ=255)                cAGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑Ct                                                                                                                                                >  4:323837/1‑136 (MQ=255)                 aGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTgg                                                                                                                                    >  6:178386/1‑147 (MQ=255)                 aGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGaa                                                                                                                                  <  5:13296/149‑1 (MQ=255)                        ccAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCa                                                                                                                              <  7:54142/146‑1 (MQ=255)                         cAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTAGGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTAGAAGGCATCg                                                                                                                           <  1:92947/148‑1 (MQ=255)                              ccattgcggcagatgggccaggtggccgccagcgtgtcagcgcgctccctcaccacccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatg                                                                                                                                                   >  1:345568‑M1/120‑120 (MQ=255)                              ccattgcggcagatgggccaggtggccgccagcgtgtcagcgcgctccctcaccacccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatg                                                                                                                                                   <  2:345568‑M1/1‑1 (MQ=255)                                 cctGCAGTGCCTGTGGGTATTCTTCGCGGCGGCGTGGGCGGGTGAGGGTGACCTGGGTGTGGGTCAGCAGGTTGGGCAGCGGCGTAGGTTACTCGTGGGCGATGTCGGGGGAAAACG‑CTGCCAGGCGCTGGAAGGCGTCGTCCCGgcgc                                                                                                                  >  4:264766/3‑149 (MQ=255)                                          cctcgaggTATTCTTCGAGGCTGCGTGGGAGGGTCAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACATCTGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATc                                                                                                         <  1:106731/143‑1 (MQ=255)                                          atgggccaggtggccgccagcgtgtcagcgcgctccctcaccacccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATc                                                                                                         >  5:170076‑M1/108‑149 (MQ=255)                                              gccaggtggccgccagcgtgtcagcgcgctccctcaccacccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGt                                                                                                     <  2:38460‑M1/46‑1 (MQ=255)                                                caggtggccgccagcgtgtcagcgcgctccctcaccacccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTc                                                                                                   >  1:38460‑M1/102‑149 (MQ=255)                                                 gTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCa                                                                                                  >  8:159860/1‑149 (MQ=255)                                                       ttcGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCAtgctgc                                                                                            >  5:156161/1‑149 (MQ=255)                                                          gatgccgCGTGGGCGGGTGTTGGGGAACTTGGTGTGCGTCATGATGTTGGAAATGCGCGTAAGTAACTCGTGGGCGTAATCGGCCGTAAACGCCTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGctgctg                                                                                          <  1:103750/143‑1 (MQ=255)                                                             gCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTg                                                                                                                <  3:204736/123‑1 (MQ=255)                                                             gCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGc                                                                                        >  3:196667/1‑147 (MQ=255)                                                             gCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGACGAAAACG‑CTGACAGGCGCTGGAATGCATCGTCCAGGCGCTg                                                                                                                >  4:204736/1‑123 (MQ=255)                                                             gCTGCGTGGGCGGGTGAGGGGGACCTGGGGGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCa                                                                                      <  2:333968/149‑1 (MQ=255)                                                              cTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAg                                                                                     >  2:282408/1‑149 (MQ=255)                                                                       cGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCaa                                                                          <  3:264766/149‑1 (MQ=255)                                                                          gtgagggtgaCCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAActc                                                                       >  5:324742/1‑149 (MQ=255)                                                                               ggtgaCCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGgcg                                                                                                                   >  1:42562/1‑102 (MQ=255)                                                                               ggtgaCCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGgcg                                                                                                                   <  2:42562/102‑1 (MQ=255)                                                                               ggtgaCCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCgg                                                                  <  4:196667/149‑1 (MQ=255)                                                                               ggtgaCCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCgg                                                                  >  5:182019/1‑149 (MQ=255)                                                                               ggtgaCCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCg                                                                   <  6:156161/148‑1 (MQ=255)                                                                                    acccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATcgcg                                                                                                      >  6:315943‑M1/66‑110 (MQ=255)                                                                                    acccgtctgccggtggcgcagatgcccgaagagttggccgagctggccagcagcatgaacgcgatG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATcgcg                                                                                                      <  5:315943‑M1/45‑1 (MQ=255)                                                                                                 cagcagGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCgg                                                  >  8:5974/1‑147 (MQ=255)                                                                                                 cagcagGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCgg                                                  >  8:1768/1‑147 (MQ=255)                                                                                                  agcagGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCa                                                <  6:324742/148‑1 (MQ=255)                                                                                                    cagGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGAc                                             >  1:169382/1‑149 (MQ=255)                                                                                                      ggTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACgg                                           <  3:148970/149‑1 (MQ=255)                                                                                                           gACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCg                                                                               >  2:299723/1‑108 (MQ=255)                                                                                                           gACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCg                                                                               <  1:299723/108‑1 (MQ=255)                                                                                                              aGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAg                                   <  2:169382/149‑1 (MQ=255)                                                                                                               gcggcgTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAgg                                  <  7:159860/149‑1 (MQ=255)                                                                                                                     tacgtaACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATTGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAgcgc                            <  5:373191/149‑1 (MQ=255)                                                                                                                       cgtaACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAgcgcgc                          <  7:1768/149‑1 (MQ=255)                                                                                                                        gtaACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGa                                    <  4:25430/138‑1 (MQ=255)                                                                                                                        gtaACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGa                                    >  3:25430/1‑138 (MQ=255)                                                                                                                          aaCTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGc                                                                             <  1:221693/95‑1 (MQ=255)                                                                                                                          aaCTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGc                                                                             >  2:221693/1‑95 (MQ=255)                                                                                                                                tGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCt                 >  2:41172/1‑149 (MQ=255)                                                                                                                                    cGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTggcg             <  5:178386/149‑1 (MQ=255)                                                                                                                                              cGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGc   >  8:52665/1‑149 (MQ=255)                                                                                                                                               gAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGcc  <  7:52665/149‑1 (MQ=255)                                                                                                                                                 aaaCG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGGAGACGGCCAACAAATACGGCATCAGCGCCACCCGCCAACCGGTGGGTCGGGCGCGCGCGTACCCCCTTGCCGCCCCCTGGcc  >  1:112920/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CTGCGCCATCCATTGCAGTTCTTCCAGGTTGCCATGCAGTGCCTCTCGGTATTCTTCGAGGCTGCGTGGGCGGGTGAGGGTGACCTGGGTGTGCGTCAGCAGGTTGGACAGCGGCGTACGTAACTCGTGGGCGATATCGGCCGAAAACG‑CTGACAGGCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAG‑‑CTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCC  >  NC_002947/2464786‑2465076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.