New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2547986	36 (0.610)	4 (0.070)	4/242	NT	9.4%	coding (216/888 nt)	rhtA	threonine/homoserine exporter
	?	NC_002947	= 2548018	43 (0.770)					coding (184/888 nt)	rhtA	threonine/homoserine exporter

CTCGGCGCGAGGAGAAGATCGCCACGGCCAACGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGA  >  NC_002947/2547844‑2548132                                                                                                                                               |                                                                                                                                                   cTCGGCGCGAGGAGAAGATCGCCACGGCCAACGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACgtg                                                                                                                                              >  1:365088/1‑149 (MQ=255)    ggCGCGAGGAGAAGATCGCCACGGCCAACGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACgtgt                                                                                                                                             <  2:365088/147‑1 (MQ=255)     gcgcGAGGAGAAGATCGCCACGGCCAACCGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGGTTGCAGCGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTgg                                                                                                                                          <  4:72950/149‑1 (MQ=255)        cgAGGAGAAGATCGCCACGGCCAACGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCgg                                                                                                                                       <  6:201945/149‑1 (MQ=255)              gaagaTCGCCACGGCCAACGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGc                                                                                                                                 >  4:43756/1‑149 (MQ=255)              gaagaTCGCCACGGCCAACGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGc                                                                                                                                 <  3:43756/149‑1 (MQ=255)                   tCGCCACGGCCAACGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCccgtggcgggtacgcatgaccgc                                                                                                                             >  2:247827‑M1/1‑125 (MQ=255)                              aaCGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCccgtggcgggtacgcatgaccgccaacacgttgcg                                                                                                                 <  1:247827‑M1/149‑36 (MQ=255)                                   gCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCccgtggcgggtacgcatgaccgccaacacgttgcgcaatg                                                                                                            <  1:177971‑M1/149‑41 (MQ=255)                                     cGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCccgtggcgggtacgcatgaccgccaacacgttgcgcaatgtg                                                                                                          <  6:216829‑M1/149‑43 (MQ=255)                                     cGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCAt                                                                                                                                   >  1:15125/1‑124 (MQ=255)                                     cGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCAt                                                                                                                                   <  2:15125/124‑1 (MQ=255)                                        tGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAagc                                                                                                       <  1:155718/149‑1 (MQ=255)                                               cAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAGGCAGCatg                                                                                                 <  3:246695/148‑1 (MQ=255)                                                 gggCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCa                                                                                                                                                   <  7:200447/96‑1 (MQ=255)                                                 gggCGACGGCGATACCGATTGGTACAGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCa                                                                                                                                                   >  8:200447/1‑96 (MQ=255)                                                          cGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCg                                                                                     <  5:285119/149‑1 (MQ=255)                                                             tACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGc                                                                                      >  6:78719/1‑145 (MQ=255)                                                             tACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGc                                                                                      <  5:78719/145‑1 (MQ=255)                                                                      gTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGgcg                                                                          >  6:359683/1‑148 (MQ=255)                                                                                 aGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGACGTAGATGACCACATTGCGAAACGTGTTGACGGTCATGCGTACCCGCCACGGGAGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                              >  2:311998/1‑149 (MQ=255)                                                                                    gCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGcc                                                           <  1:208007/149‑1 (MQ=255)                                                                                        tataGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTtgt                                                       >  1:181538/1‑149 (MQ=255)                                                                                           agaagaGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                              >  7:65211/1‑139 (MQ=255)                                                                                           agaagaGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                              <  8:65211/139‑1 (MQ=255)                                                                                                          tGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGGATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAAc                                     <  2:16744/149‑1 (MQ=255)                                                                                                             cgccCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                              <  7:102676/121‑1 (MQ=255)                                                                                                             cgccCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                              <  7:97315/121‑1 (MQ=255)                                                                                                             cgccCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                              >  8:102676/1‑121 (MQ=255)                                                                                                             cgccCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                              >  8:97315/1‑121 (MQ=255)                                                                                                                 cAGTGCCATGCCGTAGATGACCACATTGCGCATCGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGGGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCttt                              <  5:359683/149‑1 (MQ=255)                                                                                                                  aGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCtttt                             <  5:26769/149‑1 (MQ=255)                                                                                                                      ccATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGc                          >  2:75175/1‑148 (MQ=255)                                                                                                                              tAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGAAGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATc                                           >  4:372556/1‑123 (MQ=255)                                                                                                                              tAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGAAGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATc                                           <  3:372556/123‑1 (MQ=255)                                                                                                                                gATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGgcgc               >  5:108931/1‑149 (MQ=255)                                                                                                                                   gACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg             >  6:13380/1‑148 (MQ=255)                                                                                                                                   gACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg             >  7:65499/1‑148 (MQ=255)                                                                                                                                     ccACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGAc          <  8:65499/149‑1 (MQ=255)                                                                                                                                      cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGgcgcaatgtggtcatctacggcatggcactgggcggcatgaacttcctcttctatatggccctgcaaacggtaccaatcggtatcgccgtcgccctggaattcaccg         <  6:216829‑M2/149‑108 (MQ=255)                                                                                                                                      cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACt         <  6:108931/149‑1 (MQ=255)                                                                                                                                      cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACt         >  7:61331/1‑149 (MQ=255)                                                                                                                                      cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACCGGCGCAATATACGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGAGCTACTGCCTTGTGCGGCGCCGCTCGGGTACATGCTTTTGGCCAGGGAGGCGCAGGAcg         >  8:72308/1‑148 (MQ=255)                                                                                                                                        caTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGgcgcaatgtggtcatctacggcatggcactgggcggcatgaacttcctcttctatatggccctgcaaacggtaccaatcggtatcgccgtcgccctggaattcaccggc       <  1:177971‑M2/149‑110 (MQ=255)                                                                                                                                             cgcAACGTGTTGGCGGTCATGCGTACCCGCCACGGgcgcaatgtggtcatctacggcatggcactgggcggcatgaacttcctcttctatatggccctgcaaacggtaccaatcggtatcgccgtcgccctggaattcaccggcccgtt  <  1:247827‑M2/149‑115 (MQ=255)                                                                                                                                               |                                                                                                                                                   CTCGGCGCGAGGAGAAGATCGCCACGGCCAACGGGCCGGTGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGA  >  NC_002947/2547844‑2548132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.