New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2547986	36 (0.610)	4 (0.070)	4/242	NT	9.4%	coding (216/888 nt)	rhtA	threonine/homoserine exporter
	?	NC_002947	= 2548018	43 (0.770)					coding (184/888 nt)	rhtA	threonine/homoserine exporter

TGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGA  >  NC_002947/2547883‑2548164                                                                                                                                        |                                                                                                                                                   tGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAagc                                                                                                                                       <  1:155718/149‑1 (MQ=255)        cAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAGGCAGCatg                                                                                                                                 <  3:246695/148‑1 (MQ=255)                   cGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCg                                                                                                                     <  5:285119/149‑1 (MQ=255)                      tACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGc                                                                                                                      <  5:78719/145‑1 (MQ=255)                      tACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGc                                                                                                                      >  6:78719/1‑145 (MQ=255)                               gTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGgcg                                                                                                          >  6:359683/1‑148 (MQ=255)                                          aGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGACGTAGATGACCACATTGCGAAACGTGTTGACGGTCATGCGTACCCGCCACGGGAGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                                                              >  2:311998/1‑149 (MQ=255)                                             gCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGcc                                                                                           <  1:208007/149‑1 (MQ=255)                                                 tataGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTtgt                                                                                       >  1:181538/1‑149 (MQ=255)                                                    agaagaGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                                                              <  8:65211/139‑1 (MQ=255)                                                    agaagaGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                                                              >  7:65211/1‑139 (MQ=255)                                                                   tGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGGATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAAc                                                                     <  2:16744/149‑1 (MQ=255)                                                                      cgccCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                                                              >  8:97315/1‑121 (MQ=255)                                                                      cgccCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                                                              <  7:102676/121‑1 (MQ=255)                                                                      cgccCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                                                              <  7:97315/121‑1 (MQ=255)                                                                      cgccCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGt                                                                                              >  8:102676/1‑121 (MQ=255)                                                                          cAGTGCCATGCCGTAGATGACCACATTGCGCATCGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGGGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCttt                                                              <  5:359683/149‑1 (MQ=255)                                                                           aGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCtttt                                                             <  5:26769/149‑1 (MQ=255)                                                                               ccATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGc                                                          >  2:75175/1‑148 (MQ=255)                                                                                       tAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGAAGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATc                                                                           <  3:372556/123‑1 (MQ=255)                                                                                       tAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGAAGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATc                                                                           >  4:372556/1‑123 (MQ=255)                                                                                         gATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGgcgc                                               >  5:108931/1‑149 (MQ=255)                                                                                            gACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg                                             >  7:65499/1‑148 (MQ=255)                                                                                            gACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg                                             >  6:13380/1‑148 (MQ=255)                                                                                              ccACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGAc                                          <  8:65499/149‑1 (MQ=255)                                                                                               cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGgcgcaatgtggtcatctacggcatggcactgggcggcatgaacttcctcttctatatggccctgcaaacggtaccaatcggtatcgccgtcgccctggaattcaccg                                         <  6:216829‑M2/149‑108 (MQ=255)                                                                                               cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACt                                         <  6:108931/149‑1 (MQ=255)                                                                                               cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACt                                         >  7:61331/1‑149 (MQ=255)                                                                                               cacaTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACCGGCGCAATATACGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGAGCTACTGCCTTGTGCGGCGCCGCTCGGGTACATGCTTTTGGCCAGGGAGGCGCAGGAcg                                         >  8:72308/1‑148 (MQ=255)                                                                                                 caTTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGgcgcaatgtggtcatctacggcatggcactgggcggcatgaacttcctcttctatatggccctgcaaacggtaccaatcggtatcgccgtcgccctggaattcaccggc                                       <  1:177971‑M2/149‑110 (MQ=255)                                                                                                      cgcAACGTGTTGGCGGTCATGCGTACCCGCCACGGgcgcaatgtggtcatctacggcatggcactgggcggcatgaacttcctcttctatatggccctgcaaacggtaccaatcggtatcgccgtcgccctggaattcaccggcccgtt                                  <  1:247827‑M2/149‑115 (MQ=255)                                                                                                               ttGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATgg                          <  2:181538/148‑1 (MQ=255)                                                                                                                 ggCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAg                                                                                                       >  8:133864/1‑69 (MQ=255)                                                                                                                 ggCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAg                                                                                                       <  7:133864/69‑1 (MQ=255)                                                                                                                  gCGGTCATGCGTACCCGCCACGGgcgcaatgtggtcatctacggcatggcactgggcggcatgaacttcctcttctatatggccctgcaaacggtaccaatcggtatcgccgtcgccctggaattcaccggcccgttggccgtggcga                       >  2:247827‑M2/1‑23 (MQ=255)                                                                                                                          gCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAggg                                                     >  4:57600/1‑110 (MQ=255)                                                                                                                          gCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAggg                                                     <  3:57600/110‑1 (MQ=255)                                                                                                                          gCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAg                >  4:88290/1‑147 (MQ=255)                                                                                                                           cGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTa              <  5:13380/148‑1 (MQ=255)                                                                                                                               cccGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg                                             <  3:31322/113‑1 (MQ=255)                                                                                                                               cccGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCg                                             >  4:31322/1‑113 (MQ=255)                                                                                                                                ccGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGcc                                              >  2:194237/1‑111 (MQ=255)                                                                                                                                ccGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGcc                                              <  1:194237/111‑1 (MQ=255)                                                                                                                                 cGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGAt       >  3:63983/1‑149 (MQ=255)                                                                                                                                  gCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCa                             <  3:36917/126‑1 (MQ=255)                                                                                                                                  gCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCa                             >  4:36917/1‑126 (MQ=255)                                                                                                                                  gCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATc      >  8:300508/1‑149 (MQ=255)                                                                                                                                     aCGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCgg    >  6:286733/1‑148 (MQ=255)                                                                                                                                      cGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGa  <  1:75175/149‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                   TGAATTCCAGGGCGACGGCGATACCGATTGGTACCGTTTGCAGGGCCATATAGAAGAGGAAGTTCATGCCGCCCAGTGCCATGCCGTAGATGACCACATTGCGCAACGTGTTGGCGGTCATGCGTACCCGCCACGGGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGA  >  NC_002947/2547883‑2548164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.