New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 317622146 (0.780)3 (0.050) 3/240 NT 5.3% coding (1522/2610 nt) PP_2787 transporter
?NC_002947 = 3176271 64 (1.160)coding (1572/2610 nt) PP_2787 transporter

CTATCTGGTGGTGTTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCTGGACCAGTTCATCAAG  >  NC_002947/3176073‑3176364
                                                                                                                                                     |                                                                                                                                               
cTATCTGGTGGTGTTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGG                                                                                                                                                 >  7:292062‑M1/1‑149 (MQ=255)
       gtggtgTTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGAt                                                                                                                                          >  1:58993/1‑149 (MQ=255)
          gtgtTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGt                                                                                                                                        <  1:280501/148‑1 (MQ=255)
                           gATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAAcc                                                                                                                      >  1:186756/1‑149 (MQ=255)
                           gATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAAcc                                                                                                                      >  5:50464/1‑149 (MQ=255)
                                gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTg                                                                                                                                               >  3:237436/1‑119 (MQ=255)
                                gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTg                                                                                                                                               <  4:237436/119‑1 (MQ=255)
                                gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGcc                                                                                                                 >  4:172719/1‑149 (MQ=255)
                                gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGcc                                                                                                                 >  4:49726/1‑149 (MQ=255)
                                gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGc                                                                                                                  <  8:187326/148‑1 (MQ=255)
                                    gcgcAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCAGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGa                                                                                                              <  1:258918/149‑1 (MQ=255)
                                      gcAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTc                                                                                                           >  6:49935/1‑149 (MQ=255)
                                          gCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCg                                                                                                       <  5:174445/149‑1 (MQ=255)
                                           ccGGTATTGCTGGTGACCCTTCCGTTGTTTGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGcc                                                                                                                 <  1:251040/138‑1 (MQ=255)
                                           ccGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGcc                                                                                                                 >  2:251040/1‑138 (MQ=255)
                                            cGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGt                                                                                                     <  5:49935/149‑1 (MQ=255)
                                                 ttGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCaa                                                                                                                        <  6:344179/125‑1 (MQ=255)
                                                 ttGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCaa                                                                                                                        >  5:344179/1‑125 (MQ=255)
                                                  tGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCg                                                                                               >  3:68847/1‑149 (MQ=255)
                                                          aCCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGcgatgtaccggcgactccggcccggttgatgaactcgtcggacatccgcaccgggct                                                                                        <  2:311653‑M1/148‑58 (MQ=255)
                                                            ccTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGcgatgtaccggcgactccggcccggttgatgaactcgtcggacatccgcaccgggctg                                                                                       >  4:147052‑M1/1‑89 (MQ=255)
                                                            ccTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGcgatgtaccggcgactccggcccggttgatgaactcgtcggacatccgcaccgggctg                                                                                       <  3:147052‑M1/147‑59 (MQ=255)
                                                             cTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGAt                                                                                    <  6:7624/149‑1 (MQ=255)
                                                                   ttgttgGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCttt                                                                              >  6:266819/1‑149 (MQ=255)
                                                                         gCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGacac                                                                        <  6:50464/149‑1 (MQ=255)
                                                                         gCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGacac                                                                        >  7:60463/1‑149 (MQ=255)
                                                                         gCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGaca                                                                         <  2:186756/148‑1 (MQ=255)
                                                                               atgaCGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGa                                                                   <  8:292062/148‑1 (MQ=255)
                                                                                 gaCGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAATCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTc                                                                >  1:125494/1‑149 (MQ=255)
                                                                                  aCGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTcc                                                               >  8:140697/1‑149 (MQ=255)
                                                                                    ggTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCcgc                                                             <  4:68847/149‑1 (MQ=255)
                                                                                             gTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGgcgcgc                                                    >  8:49494/1‑149 (MQ=255)
                                                                                                  aGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCttt                                                                              >  1:71802/1‑118 (MQ=255)
                                                                                                  aGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCttt                                                                              <  2:71802/118‑1 (MQ=255)
                                                                                                   ggTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCa                                              >  6:126780/1‑149 (MQ=255)
                                                                                                   ggTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCa                                              >  8:36613/1‑149 (MQ=255)
                                                                                                     tGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACt                                            <  7:36613/149‑1 (MQ=255)
                                                                                                     tGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACt                                            <  2:58993/149‑1 (MQ=255)
                                                                                                     tGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACt                                            <  3:172719/149‑1 (MQ=255)
                                                                                                     tGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACt                                            <  5:266819/149‑1 (MQ=255)
                                                                                                        atatCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGa                                          >  3:28032/1‑148 (MQ=255)
                                                                                                                  cTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGt                               <  8:60463/149‑1 (MQ=255)
                                                                                                                     gggCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTcc                            >  1:106118/1‑149 (MQ=255)
                                                                                                                      ggCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCt                           >  7:214060/1‑149 (MQ=255)
                                                                                                                              cTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGAcc                      >  1:335342/1‑146 (MQ=255)
                                                                                                                              cTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGAcc                      <  2:335342/146‑1 (MQ=255)
                                                                                                                              cTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTc                   <  2:106118/149‑1 (MQ=255)
                                                                                                                               tACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCt                  >  3:359841/1‑149 (MQ=255)
                                                                                                                                  ttCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTc                             <  6:137911/135‑1 (MQ=255)
                                                                                                                                  ttCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTc                             >  5:137911/1‑135 (MQ=255)
                                                                                                                                     aagaagGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCTGGAc              >  2:36541/1‑147 (MQ=255)
                                                                                                                                             cAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGccgggctgtccttcttgaagtaggcaatgcccgagtcttcgatatccaccttgaacgtgaacaccgtcatcatcgccaacaacggaagg      >  4:147052‑M2/1‑58 (MQ=255)
                                                                                                                                             cAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGccgggctgtccttcttgaagtaggcaatgcccgagtcttcgatatccaccttgaacgtgaacaccgtcatcatcgccaacaacggaagg      <  3:147052‑M2/147‑90 (MQ=255)
                                                                                                                                              aGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGccgggctgtccttcttgaagtaggcaatgcccgagtcttcgatatccaccttgaacgtgaacaccgtcatcatcgccaacaacggaagggt    <  2:311653‑M2/148‑92 (MQ=255)
                                                                                                                                               gCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCTGGACCAGTTCATCAAg  <  4:359841/149‑1 (MQ=255)
                                                                                                                                                cccGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTc                   >  7:199607/1‑131 (MQ=255)
                                                                                                                                                cccGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTc                   <  8:199607/131‑1 (MQ=255)
                                                                                                                                                  cGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAg                                >  3:24705/1‑116 (MQ=255)
                                                                                                                                                  cGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAg                                <  4:24705/116‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                               
CTATCTGGTGGTGTTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCTGGACCAGTTCATCAAG  >  NC_002947/3176073‑3176364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.