New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3176221 | 46 (0.780) | 3 (0.050) | 3/240 | NT | 5.3% | coding (1522/2610 nt) | PP_2787 | transporter |
? | NC_002947 | = 3176271 | 64 (1.160) | coding (1572/2610 nt) | PP_2787 | transporter |
CTATCTGGTGGTGTTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCTGGACCAGTTCATCAAG > NC_002947/3176073‑3176364 | cTATCTGGTGGTGTTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GG > 7:292062‑M1/1‑149 (MQ=255) gtggtgTTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGAt > 1:58993/1‑149 (MQ=255) gtgtTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGt < 1:280501/148‑1 (MQ=255) gATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAAcc > 1:186756/1‑149 (MQ=255) gATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAAcc > 5:50464/1‑149 (MQ=255) gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTg > 3:237436/1‑119 (MQ=255) gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTg < 4:237436/119‑1 (MQ=255) gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGcc > 4:172719/1‑149 (MQ=255) gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGcc > 4:49726/1‑149 (MQ=255) gCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGc < 8:187326/148‑1 (MQ=255) gcgcAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCCAGGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGa < 1:258918/149‑1 (MQ=255) gcAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTc > 6:49935/1‑149 (MQ=255) gCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCg < 5:174445/149‑1 (MQ=255) ccGGTATTGCTGGTGACCCTTCCGTTGTTTGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGcc < 1:251040/138‑1 (MQ=255) ccGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGcc > 2:251040/1‑138 (MQ=255) cGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGt < 5:49935/149‑1 (MQ=255) ttGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCaa < 6:344179/125‑1 (MQ=255) ttGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCaa > 5:344179/1‑125 (MQ=255) tGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCg > 3:68847/1‑149 (MQ=255) aCCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGcgatgtaccggcgactccggcccggttgatgaactcgtcggacatccgcaccgggct < 2:311653‑M1/148‑58 (MQ=255) ccTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGcgatgtaccggcgactccggcccggttgatgaactcgtcggacatccgcaccgggctg > 4:147052‑M1/1‑89 (MQ=255) ccTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGcgatgtaccggcgactccggcccggttgatgaactcgtcggacatccgcaccgggctg < 3:147052‑M1/147‑59 (MQ=255) cTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGAt < 6:7624/149‑1 (MQ=255) ttgttgGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCttt > 6:266819/1‑149 (MQ=255) gCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGacac < 6:50464/149‑1 (MQ=255) gCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGacac > 7:60463/1‑149 (MQ=255) gCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGaca < 2:186756/148‑1 (MQ=255) atgaCGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGa < 8:292062/148‑1 (MQ=255) gaCGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAATCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTc > 1:125494/1‑149 (MQ=255) aCGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTcc > 8:140697/1‑149 (MQ=255) ggTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCcgc < 4:68847/149‑1 (MQ=255) gTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGgcgcgc > 8:49494/1‑149 (MQ=255) aGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCttt > 1:71802/1‑118 (MQ=255) aGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCttt < 2:71802/118‑1 (MQ=255) ggTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCa > 6:126780/1‑149 (MQ=255) ggTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCa > 8:36613/1‑149 (MQ=255) tGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACt < 7:36613/149‑1 (MQ=255) tGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACt < 2:58993/149‑1 (MQ=255) tGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACt < 3:172719/149‑1 (MQ=255) tGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACt < 5:266819/149‑1 (MQ=255) atatCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGa > 3:28032/1‑148 (MQ=255) cTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGt < 8:60463/149‑1 (MQ=255) gggCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTcc > 1:106118/1‑149 (MQ=255) ggCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCt > 7:214060/1‑149 (MQ=255) cTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGAcc > 1:335342/1‑146 (MQ=255) cTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGAcc < 2:335342/146‑1 (MQ=255) cTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTc < 2:106118/149‑1 (MQ=255) tACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCt > 3:359841/1‑149 (MQ=255) ttCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTc < 6:137911/135‑1 (MQ=255) ttCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTc > 5:137911/1‑135 (MQ=255) aagaagGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCTGGAc > 2:36541/1‑147 (MQ=255) cAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGccgggctgtccttcttgaagtaggcaatgcccgagtcttcgatatccaccttgaacgtgaacaccgtcatcatcgccaacaacggaagg > 4:147052‑M2/1‑58 (MQ=255) cAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGccgggctgtccttcttgaagtaggcaatgcccgagtcttcgatatccaccttgaacgtgaacaccgtcatcatcgccaacaacggaagg < 3:147052‑M2/147‑90 (MQ=255) aGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGccgggctgtccttcttgaagtaggcaatgcccgagtcttcgatatccaccttgaacgtgaacaccgtcatcatcgccaacaacggaagggt < 2:311653‑M2/148‑92 (MQ=255) gCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCTGGACCAGTTCATCAAg < 4:359841/149‑1 (MQ=255) ccc‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTc > 7:199607/1‑131 (MQ=255) ccc‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTc < 8:199607/131‑1 (MQ=255) c‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAg > 3:24705/1‑116 (MQ=255) c‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAg < 4:24705/116‑1 (MQ=255) | CTATCTGGTGGTGTTCTGTGCCTGGCTGATTCGCTGGCGCAAGCCGGTATTGCTGGTGACCCTTCCGTTGTTGGCGATGATGACGGTGTTCACGTTCAAGGTGGATATCGAAGACTCGGGCATTGCCTACTTCAAGAAGGACAGCCC‑GGTGCGGATGTCCGACGAGTTCATCAACCGGGCCGGAGTCGCCGGTACATCGCCGGGCTGGATCGCTTTCGACACCAAGACTCCGCGTGGCGCGCTGACCACTGAAACCGTGCAGTTCCTCGACCGTCTGGACCAGTTCATCAAG > NC_002947/3176073‑3176364 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |