New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3339171	32 (0.540)	3 (0.050)	3/246	NT	7.4%	intergenic (‑173/+70)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	= 3339248	44 (0.770)					coding (1580/1587 nt)	ybiT	ABC‑F family ATPase

GGCGTGGTCCCATCATGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGC  >  NC_002947/3339024‑3339316                                                                                                                                                    |                                                                                                                                                    ggCGTGGTCCCATCATGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCg                                                                                                                                                    >  6:19816/1‑149 (MQ=255)    gTGGTCCCATCATGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCATGACCGCTCTCCCCACGCCCCCCAAGCGTCCAAAACCTGTGCGGTc                                                                                                                                                 >  7:125513/1‑149 (MQ=255)          ccATCATGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑tgtg                                                                                                                                          <  8:295657/149‑1 (MQ=255)           catcatGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTgg                                                                                                                                         <  5:19816/149‑1 (MQ=255)                  gCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcggg                                                                                                                                  >  5:223613‑M2/1‑142 (MQ=255)                   ccGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTACCAAGGCCCCACCAGCGTCCAATAACAGTTGGGGCCC‑GGTGGgagcggg                                                                                                                                  <  3:61400‑M2/148‑8 (MQ=255)                     gTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaa                                                                                                                               >  1:91254‑M2/1‑139 (MQ=255)                               ggAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcg                                                                                                                        <  3:68367‑M2/146‑18 (MQ=255)                               ggAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcg                                                                                                                        <  3:252463‑M2/146‑18 (MQ=255)                                gAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGGCCCCTCTCCCAAGGCCCCCCAAGCGGCCAATAACTGTGCGGTGCC‑GGTGGgcgcgggcaagcccgcgaagc                                                                                                                    <  1:241123‑M2/149‑22 (MQ=255)                                       cagcagGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGTATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCgg                                                                                                             <  4:252463/149‑1 (MQ=255)                                           agGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCTAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCAt                                                                                                         <  1:99816/149‑1 (MQ=255)                                             gCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATcc                                                                                                       >  7:211671/1‑149 (MQ=255)                                               tAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATcc                                                                                                       >  1:68975/1‑147 (MQ=255)                                               tAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCg‑a                                                                                                    <  2:68975/149‑1 (MQ=255)                                                    aaTTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCGCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATgg                                                                                               <  7:340078/149‑1 (MQ=255)                                                         ttCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTATACCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGAAGGCCAgg                                                                                          >  8:62668/1‑149 (MQ=255)                                                            gccgggccgggcCGGTCGGGGGGAGGGGGATGTCCTCAGCGCGGGCTTGCCCCCTCTCCCAACGCCCCACCAGCGGCCCATTCCTGTGCGGTCCC‑TGTGCGAGCGGGCAAGCCCGCGAAGAGGCCGGGCCAGCCG‑AGATGGCCAGGcc                                                                                        <  8:278795/146‑1 (MQ=25)                                                             tcgGGACGTGCCGGTCGGTGGGATGGGGATGTACGCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGGGCGGGCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGt                                                                                      <  7:343863/149‑1 (MQ=255)                                                               gggCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCGTGCCCGCGCGCCCCAGGCCCCCCCACCGGCCACTACCAGGGCGGGGCC‑GGGGGGGGCGGGCCACCCCGCGCCCCGGCCCGGCCCGCCG‑CGCaggccaggcccgcc                                                                                    >  6:10432/1‑145 (MQ=255)                                                                  ccGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCat                                                                                 <  4:68367/149‑1 (MQ=255)                                                                        cggtcggtGGGATGGGGATGTACTCTTCGCGGGCTTGCCCCCTCACCCAAGGCCCCACAACCGTCCAATACCTGTGCGGTACC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCCGCCAACCC‑AGATGGCCAGGCCGTCCCatcaatc                                                                            >  2:112612/1‑148 (MQ=38)                                                                                    tggggatgTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCtggtctgattgatgggacggcctggccatctcggatggccgggcctcttcgcgggcttgcccgctcccacagggaccgcacagg                                                                 >  4:310877‑M1/1‑65 (MQ=255)                                                                                    tggggatgTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCtggtctgattgatgggacggcctggccatctcggatggccgggcctcttcgcgggcttgcccgctcccacagggaccgcacagg                                                                 <  5:106338‑M1/149‑85 (MQ=255)                                                                                      ggcaggTACTCTGCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGGCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCt                                                             <  3:171887/144‑1 (MQ=255)                                                                                       ggatgTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTg                                                            <  1:41531/149‑1 (MQ=255)                                                                                        gatgTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCtggtctgattgatgggacggcctggccatctcggatggccgggcctcttcgcgggcttgcccgctcccacagggaccgcacaggtatt                                                             <  3:310877‑M1/149‑89 (MQ=255)                                                                                               tctTCGCGGGCTTGCCCGCACTCCCAAGGCCCCCCAAGCGGGCAAAAACAGTGGGGTCCC‑GGTGGGAGCGGGGCAGCCCGCGAAGAGGCCCGGCCCTACG‑ACATGGCCCGGCCGGCCCCTCAATACAACCCGCACACCCAGGCGACg                                                      >  8:335982/1‑147 (MQ=255)                                                                                                   cgcgGGCGTGCCCGCGCTCCCACGGCCCCACAAGCGGCCACTACCTGTGCGGGCCC‑TGGGGGCGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAg                                                   <  5:10432/146‑1 (MQ=255)                                                                                                    gcgGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAg                                               >  7:50364/1‑149 (MQ=255)                                                                                                     cgGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcgaagagtacatccccatcccaccgaccggcacggcccgacgaataattcgttagcctgctgtcttttccttcgc                                               >  3:372647‑M2/1‑59 (MQ=255)                                                                                                        gCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCAt                                           >  1:160923/1‑149 (MQ=255)                                                                                                          ttGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGGGACGCAGGTAGTCAGCg                                         >  4:206478/1‑149 (MQ=255)                                                                                                            gCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcgaagagtacatccccatcccaccgaccggcacggcccgacgattaattcgttagcctgctgtctttccttcgcgcaacggc                                        <  1:67457‑M2/149‑98 (MQ=255)                                                                                                                gCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTa                                   >  3:162726/1‑149 (MQ=255)                                                                                                                  gttcCCAAGGGCCCACAACCCTCCAATTCCTGGGCCGTCCCGTGTGGTTG‑GGGCAATGCCGGGTATTTGCCCGGCCATTCGTTTTTGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTAc                                  <  1:112612/147‑1 (MQ=255)                                                                                                                      ccAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCCTCGTAGGTACCGCt                              >  2:289194/1‑148 (MQ=255)                                                                                                                      ccAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCt                              <  7:62668/148‑1 (MQ=255)                                                                                                                       cAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTg                             >  3:41733/1‑148 (MQ=255)                                                                                                                        aaGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGaa                           <  8:50364/149‑1 (MQ=255)                                                                                                                          ggCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGgagcgggcaagcccgcgaagagtacatccccatcccaccgaccggcacggcccgacgattaattcgttagcctgctgtctttccttcgcgcaacggccatgatgggaccac                          >  2:67457‑M2/1‑38 (MQ=255)                                                                                                                             cccACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTcca                      >  1:286797/1‑149 (MQ=255)                                                                                                                                          aaTACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatc         <  3:310877‑M2/149‑62 (MQ=255)                                                                                                                                          aaTACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGc         >  7:231088/1‑149 (MQ=255)                                                                                                                                             aCCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGa      <  7:335982/149‑1 (MQ=255)                                                                                                                                              ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCTAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGa      <  2:286797/148‑1 (MQ=255)                                                                                                                                              ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatcccca     <  5:106338‑M2/149‑66 (MQ=255)                                                                                                                                              ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatcccca     >  4:310877‑M2/1‑84 (MQ=255)                                                                                                                                               cTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCAGCCGa      >  1:273221/1‑147 (MQ=255)                                                                                                                                                 gtgCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGc  >  5:209455/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGCGTGGTCCCATCATGGCCGTTGCGCGAAGGAAAAGACAGCAGGCTAACGAATTATTCGTCGGGCCGTGCCGGTCGGTGGGATGGGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGC  >  NC_002947/3339024‑3339316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.