New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3339171	32 (0.540)	3 (0.050)	3/246	NT	7.4%	intergenic (‑173/+70)	PP_2935/ybiT	membrane protein/ABC‑F family ATPase
	?	NC_002947	= 3339248	44 (0.770)					coding (1580/1587 nt)	ybiT	ABC‑F family ATPase

GGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAGGGTGCCCGGGTAGTTTT  >  NC_002947/3339109‑3339392                                                                                                                                              |                                                                                                                                                 ggcaggTACTCTGCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGGCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCt                                                                                                                                         <  3:171887/144‑1 (MQ=255)  ggatgTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTg                                                                                                                                        <  1:41531/149‑1 (MQ=255)          tctTCGCGGGCTTGCCCGCACTCCCAAGGCCCCCCAAGCGGGCAAAAACAGTGGGGTCCC‑GGTGGGAGCGGGGCAGCCCGCGAAGAGGCCCGGCCCTACG‑ACATGGCCCGGCCGGCCCCTCAATACAACCCGCACACCCAGGCGACg                                                                                                                                  >  8:335982/1‑147 (MQ=255)              cgcgGGCGTGCCCGCGCTCCCACGGCCCCACAAGCGGCCACTACCTGTGCGGGCCC‑TGGGGGCGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAg                                                                                                                               <  5:10432/146‑1 (MQ=255)               gcgGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAg                                                                                                                           >  7:50364/1‑149 (MQ=255)                   gCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCAt                                                                                                                       >  1:160923/1‑149 (MQ=255)                     ttGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGGGACGCAGGTAGTCAGCg                                                                                                                     >  4:206478/1‑149 (MQ=255)                           gCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTa                                                                                                               >  3:162726/1‑149 (MQ=255)                             gttcCCAAGGGCCCACAACCCTCCAATTCCTGGGCCGTCCCGTGTGGTTG‑GGGCAATGCCGGGTATTTGCCCGGCCATTCGTTTTTGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTAc                                                                                                              <  1:112612/147‑1 (MQ=255)                                 ccAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCCTCGTAGGTACCGCt                                                                                                          >  2:289194/1‑148 (MQ=255)                                 ccAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCt                                                                                                          <  7:62668/148‑1 (MQ=255)                                  cAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTg                                                                                                         >  3:41733/1‑148 (MQ=255)                                   aaGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGaa                                                                                                       <  8:50364/149‑1 (MQ=255)                                        cccACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTcca                                                                                                  >  1:286797/1‑149 (MQ=255)                                                     aaTACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatc                                                                                     <  3:310877‑M2/149‑62 (MQ=255)                                                     aaTACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGc                                                                                     >  7:231088/1‑149 (MQ=255)                                                        aCCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGa                                                                                  <  7:335982/149‑1 (MQ=255)                                                         ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCTAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGa                                                                                  <  2:286797/148‑1 (MQ=255)                                                         ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatcccca                                                                                 >  4:310877‑M2/1‑84 (MQ=255)                                                         ccTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAgcacaggtattggacgcttgtggggccttgggagagcgggcaagcccgcgaagagtacatcccca                                                                                 <  5:106338‑M2/149‑66 (MQ=255)                                                          cTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCAGCCGa                                                                                  >  1:273221/1‑147 (MQ=255)                                                            gtgCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGc                                                                              >  5:209455/1‑149 (MQ=255)                                                                ggTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCCTCCG‑AGATGGCCAGGCCGTCCCATCAATCAGCCCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGCCAGCTCga                                                                          >  3:43948/1‑149 (MQ=255)                                                                   ccc‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTccacc                                                                                                <  5:84458/124‑1 (MQ=255)                                                                   ccc‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTccacc                                                                                                >  6:84458/1‑124 (MQ=255)                                                                    cc‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCgatgat                                                                      >  6:218267/1‑149 (MQ=255)                                                                    cc‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCgatgat                                                                      <  2:28684/149‑1 (MQ=255)                                                                        gtgGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGAc                                                                                 <  1:86284/135‑1 (MQ=255)                                                                        gtgGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGAc                                                                                 >  2:86284/1‑135 (MQ=255)                                                                           ggAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGt                                                                <  6:209455/149‑1 (MQ=255)                                                                             aGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTgg                                                              <  4:41733/149‑1 (MQ=255)                                                                                    aaGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCgatgat                                                                      <  8:168536/134‑1 (MQ=255)                                                                                                        ccATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGt                                   <  3:206478/149‑1 (MQ=255)                                                                                                          aTCCG‑AGATGGCCAGGCCGTCCCATCAATCTGACCAGCACACCATGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCAACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTgg                                 >  1:31237/1‑149 (MQ=255)                                                                                                            ccG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGTGACGACACGAACTCGCGGTCGTGGCt                               >  3:54406/1‑149 (MQ=255)                                                                                                              g‑agaTGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGa                             >  5:358693/1‑149 (MQ=255)                                                                                                                 gaTGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACg                           <  2:160923/149‑1 (MQ=255)                                                                                                                   tGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGaa                         <  5:218267/149‑1 (MQ=255)                                                                                                                       cAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCCGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAAcagc                     <  2:273221/149‑1 (MQ=255)                                                                                                                          gCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAgg                  <  6:358693/149‑1 (MQ=255)                                                                                                                                 cATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATgcgc                                                                  <  7:350154/94‑1 (MQ=255)                                                                                                                                 cATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATgcgc                                                                  >  8:350154/1‑94 (MQ=255)                                                                                                                                 cATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAGGGTGCCCg           >  8:83239/1‑149 (MQ=255)                                                                                                                                   tcaatcaGACCAGCACACACTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCGCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAGGGTGCCCggg         >  8:160621/1‑149 (MQ=255)                                                                                                                                    caatcaGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAGGGTGCCCggg         >  7:207125/1‑148 (MQ=255)                                                                                                                                     aatcaGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAGGGTGCCCggg         >  3:250530/1‑147 (MQ=255)                                                                                                                                        caGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAGGGTGCCCGGGTAGtt    >  5:135679/1‑149 (MQ=255)                                                                                                                                         aGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCg                                                                                       <  6:268048/65‑1 (MQ=255)                                                                                                                                         aGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCg                                                                                       >  5:268048/1‑65 (MQ=255)                                                                                                                                          gACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAGGGTGCCCGGGTAGtttt  <  4:162726/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                 GGGATGTACTCTTCGCGGGCTTGCCCGCTCTCCCAAGGCCCCACAAGCGTCCAATACCTGTGCGGTCCC‑TGTGGGAGCGGGCAAGCCCGCGAAGAGGCCCGGCCATCCG‑AGATGGCCAGGCCGTCCCATCAATCAGACCAGCACACCCTGGCTACGCAGGTAGTCATCGTAGGTACCGCTGAAGTCCACCACACCATCGGCCGACAGCTCGATGATGCGCGTGGCCAGCGACGACACGAACTCGCGGTCGTGGCTGACGAACAGCAGGGTGCCCGGGTAGTTTT  >  NC_002947/3339109‑3339392

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.